Cluster: CGMR020543_CGC99
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: CGMR020543
- CGC Family ID: CGCFAM_07586
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_26356 | k141_26356_10 | 10533 | 11423 | - | 3.A.1.1.29 |
| TC | k141_26356 | k141_26356_11 | 11438 | 12355 | - | 3.A.1.1.10 |
| CAZyme | k141_26356 | k141_26356_12 | 13973 | 19186 | + | GH43_22 | GH43_34 |
| CAZyme | k141_26356 | k141_26356_13 | 19358 | 28477 | + | GH43_22 | GH43_26 | GH43_27 |
| CAZyme | k141_26356 | k141_26356_14 | 29048 | 30121 | + | GH109 |
| TF | k141_26356 | k141_26356_15 | 30122 | 30457 | + | HTH_AraC | HTH_AraC |
| CAZyme | k141_26356 | k141_26356_16 | 30477 | 31295 | - | GH43_18 |
| CAZyme | k141_26356 | k141_26356_17 | 31476 | 32834 | + | GH140 |
| TC | k141_26356 | k141_26356_18 | 32924 | 33847 | + | 2.A.115.1.2 |
| TC | k141_26356 | k141_26356_19 | 34011 | 35738 | + | 8.A.59.2.1 |
| TF | k141_26356 | k141_26356_20 | 35719 | 37233 | + | HTH_AraC | HTH_AraC |
| STP | k141_26356 | k141_26356_21 | 37402 | 38772 | + | SBP_bac_1 |
| TC | k141_26356 | k141_26356_22 | 39124 | 39972 | + | 3.A.1.1.3 |
| TC | k141_26356 | k141_26356_23 | 39983 | 40834 | + | 3.A.1.1.39 |
Gene ID: k141_26356_10
Type: TC
Location: 10533 - 11423 (-)
Type: TC
Location: 10533 - 11423 (-)
Gene ID: k141_26356_11
Type: TC
Location: 11438 - 12355 (-)
Type: TC
Location: 11438 - 12355 (-)
Gene ID: k141_26356_12
Type: CAZyme
Location: 13973 - 19186 (+)
Type: CAZyme
Location: 13973 - 19186 (+)
Gene ID: k141_26356_13
Type: CAZyme
Location: 19358 - 28477 (+)
Type: CAZyme
Location: 19358 - 28477 (+)
Gene ID: k141_26356_14
Type: CAZyme
Location: 29048 - 30121 (+)
Type: CAZyme
Location: 29048 - 30121 (+)
Gene ID: k141_26356_15
Type: TF
Location: 30122 - 30457 (+)
Type: TF
Location: 30122 - 30457 (+)
Gene ID: k141_26356_16
Type: CAZyme
Location: 30477 - 31295 (-)
Type: CAZyme
Location: 30477 - 31295 (-)
Gene ID: k141_26356_17
Type: CAZyme
Location: 31476 - 32834 (+)
Type: CAZyme
Location: 31476 - 32834 (+)
Gene ID: k141_26356_18
Type: TC
Location: 32924 - 33847 (+)
Type: TC
Location: 32924 - 33847 (+)
Gene ID: k141_26356_19
Type: TC
Location: 34011 - 35738 (+)
Type: TC
Location: 34011 - 35738 (+)
Gene ID: k141_26356_20
Type: TF
Location: 35719 - 37233 (+)
Type: TF
Location: 35719 - 37233 (+)
Gene ID: k141_26356_21
Type: STP
Location: 37402 - 38772 (+)
Type: STP
Location: 37402 - 38772 (+)
Gene ID: k141_26356_22
Type: TC
Location: 39124 - 39972 (+)
Type: TC
Location: 39124 - 39972 (+)
Gene ID: k141_26356_23
Type: TC
Location: 39983 - 40834 (+)
Type: TC
Location: 39983 - 40834 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella peoriensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.