Cluster: CGMR020543_CGC14
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR020543
- CGC Family ID: CGCFAM_07572
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_26274 | k141_26274_11 | 13892 | 14743 | - | 3.A.1.149.1 |
| TC | k141_26274 | k141_26274_12 | 14871 | 16235 | - | 2.A.66.1.34 |
| TF | k141_26274 | k141_26274_13 | 16606 | 17487 | + | HTH_AraC |
| CAZyme | k141_26274 | k141_26274_14 | 17505 | 19988 | - | GH78 |
| CAZyme | k141_26274 | k141_26274_15 | 20091 | 23165 | - | GH106 |
| TF | k141_26274 | k141_26274_16 | 23268 | 24278 | - | LacI |
| CAZyme | k141_26274 | k141_26274_17 | 24488 | 26023 | + | CBM91 | GH43_12 |
| CAZyme | k141_26274 | k141_26274_18 | 26210 | 28648 | - | GH2 |
| CAZyme | k141_26274 | k141_26274_19 | 28697 | 30421 | - | GH78 |
| pfam | k141_26274 | k141_26274_20 | 30603 | 31895 | - | MFS_1 |
| TC | k141_26274 | k141_26274_21 | 31928 | 32764 | - | 3.A.1.1.41 |
| TC | k141_26274 | k141_26274_22 | 32766 | 33641 | - | 3.A.1.1.7 |
| STP | k141_26274 | k141_26274_23 | 33785 | 35479 | - | SBP_bac_1 |
| TF | k141_26274 | k141_26274_24 | 35668 | 36678 | - | LacI |
| CAZyme | k141_26274 | k141_26274_25 | 37026 | 38276 | + | CBM6 | GH43_2 |
Gene ID: k141_26274_11
Type: TC
Location: 13892 - 14743 (-)
Type: TC
Location: 13892 - 14743 (-)
Gene ID: k141_26274_12
Type: TC
Location: 14871 - 16235 (-)
Type: TC
Location: 14871 - 16235 (-)
Gene ID: k141_26274_13
Type: TF
Location: 16606 - 17487 (+)
Type: TF
Location: 16606 - 17487 (+)
Gene ID: k141_26274_14
Type: CAZyme
Location: 17505 - 19988 (-)
Type: CAZyme
Location: 17505 - 19988 (-)
Gene ID: k141_26274_15
Type: CAZyme
Location: 20091 - 23165 (-)
Type: CAZyme
Location: 20091 - 23165 (-)
Gene ID: k141_26274_16
Type: TF
Location: 23268 - 24278 (-)
Type: TF
Location: 23268 - 24278 (-)
Gene ID: k141_26274_17
Type: CAZyme
Location: 24488 - 26023 (+)
Type: CAZyme
Location: 24488 - 26023 (+)
Gene ID: k141_26274_18
Type: CAZyme
Location: 26210 - 28648 (-)
Type: CAZyme
Location: 26210 - 28648 (-)
Gene ID: k141_26274_19
Type: CAZyme
Location: 28697 - 30421 (-)
Type: CAZyme
Location: 28697 - 30421 (-)
Gene ID: k141_26274_20
Type: pfam
Location: 30603 - 31895 (-)
Type: pfam
Location: 30603 - 31895 (-)
Gene ID: k141_26274_21
Type: TC
Location: 31928 - 32764 (-)
Type: TC
Location: 31928 - 32764 (-)
Gene ID: k141_26274_22
Type: TC
Location: 32766 - 33641 (-)
Type: TC
Location: 32766 - 33641 (-)
Gene ID: k141_26274_23
Type: STP
Location: 33785 - 35479 (-)
Type: STP
Location: 33785 - 35479 (-)
Gene ID: k141_26274_24
Type: TF
Location: 35668 - 36678 (-)
Type: TF
Location: 35668 - 36678 (-)
Gene ID: k141_26274_25
Type: CAZyme
Location: 37026 - 38276 (+)
Type: CAZyme
Location: 37026 - 38276 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella peoriensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.