Cluster: CGMR019477_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR019477
- CGC Family ID: CGCFAM_08332
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_64421 | k141_64421_2 | 609 | 2276 | + | AA3_2 |
| pfam | k141_64421 | k141_64421_3 | 2328 | 2672 | - | CMD |
| pfam | k141_64421 | k141_64421_4 | 3032 | 3379 | - | CutA1 |
| TC | k141_64421 | k141_64421_5 | 4081 | 5553 | + | 2.A.47.3.1 |
| NULL(UNKNOWN) | k141_64421 | k141_64421_6 | 5829 | 6149 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_64421 | k141_64421_7 | 6224 | 7315 | - | Oxidored_FMN | Dus |
| TC | k141_64421 | k141_64421_8 | 7900 | 9216 | + | 2.A.11.1.2 |
Gene ID: k141_64421_2
Type: CAZyme
Location: 609 - 2276 (+)
Type: CAZyme
Location: 609 - 2276 (+)
Gene ID: k141_64421_3
Type: pfam
Location: 2328 - 2672 (-)
Type: pfam
Location: 2328 - 2672 (-)
Gene ID: k141_64421_4
Type: pfam
Location: 3032 - 3379 (-)
Type: pfam
Location: 3032 - 3379 (-)
Gene ID: k141_64421_5
Type: TC
Location: 4081 - 5553 (+)
Type: TC
Location: 4081 - 5553 (+)
Gene ID: k141_64421_6
Type:
Location: 5829 - 6149 (+)
Type:
Location: 5829 - 6149 (+)
Gene ID: k141_64421_7
Type: pfam
Location: 6224 - 7315 (-)
Type: pfam
Location: 6224 - 7315 (-)
Gene ID: k141_64421_8
Type: TC
Location: 7900 - 9216 (+)
Type: TC
Location: 7900 - 9216 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Providencia
Species
Providencia alcalifaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.