Cluster: CGMR019477_CGC22
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR019477
- CGC Family ID: CGCFAM_00060
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_19022 | k141_19022_40 | 39532 | 41613 | - | 8.A.3.3.2 |
| pfam | k141_19022 | k141_19022_41 | 41641 | 42003 | - | LMWPc |
| TC | k141_19022 | k141_19022_42 | 42075 | 43223 | - | 1.B.18.3.1 |
| pfam | k141_19022 | k141_19022_43 | 43581 | 44606 | - | adh_short | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | KR | GDP_Man_Dehyd |
| pfam | k141_19022 | k141_19022_44 | 44657 | 45604 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| CAZyme | k141_19022 | k141_19022_45 | 45614 | 46432 | - | GT2 |
Gene ID: k141_19022_40
Type: TC
Location: 39532 - 41613 (-)
Type: TC
Location: 39532 - 41613 (-)
Gene ID: k141_19022_41
Type: pfam
Location: 41641 - 42003 (-)
Type: pfam
Location: 41641 - 42003 (-)
Gene ID: k141_19022_42
Type: TC
Location: 42075 - 43223 (-)
Type: TC
Location: 42075 - 43223 (-)
Gene ID: k141_19022_43
Type: pfam
Location: 43581 - 44606 (-)
Type: pfam
Location: 43581 - 44606 (-)
Gene ID: k141_19022_44
Type: pfam
Location: 44657 - 45604 (-)
Type: pfam
Location: 44657 - 45604 (-)
Gene ID: k141_19022_45
Type: CAZyme
Location: 45614 - 46432 (-)
Type: CAZyme
Location: 45614 - 46432 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Providencia
Species
Providencia alcalifaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.