Cluster: CGMR019477_CGC21
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 8
- Substrate:
- Genome ID: CGMR019477
- CGC Family ID: CGCFAM_00698
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_19022 | k141_19022_16 | 13658 | 14722 | + | GT9 |
| CAZyme | k141_19022 | k141_19022_17 | 14724 | 15848 | + | GT4 |
| pfam | k141_19022 | k141_19022_18 | 15841 | 16638 | + | Kdo |
| CAZyme | k141_19022 | k141_19022_19 | 16664 | 17665 | + | GT8 |
| CAZyme | k141_19022 | k141_19022_20 | 17678 | 18655 | + | GT8 |
| pfam | k141_19022 | k141_19022_21 | 18696 | 20249 | - | Sulfatase |
| CAZyme | k141_19022 | k141_19022_22 | 20431 | 21435 | + | GT2 |
| TC | k141_19022 | k141_19022_23 | 21430 | 22698 | - | 9.B.67.5.1 |
| pfam | k141_19022 | k141_19022_24 | 22814 | 23623 | + | Fapy_DNA_glyco | zf-FPG_IleRS | H2TH |
| pfam | k141_19022 | k141_19022_25 | 23627 | 24112 | - | CTP_transf_like | Citrate_ly_lig |
| CAZyme | k141_19022 | k141_19022_26 | 24279 | 25604 | + | GT30 |
| pfam | k141_19022 | k141_19022_27 | 25812 | 27275 | + | PMT_2 |
| CAZyme | k141_19022 | k141_19022_28 | 27371 | 28333 | - | GT9 |
| CAZyme | k141_19022 | k141_19022_29 | 28333 | 29334 | - | GT9 |
Gene ID: k141_19022_16
Type: CAZyme
Location: 13658 - 14722 (+)
Type: CAZyme
Location: 13658 - 14722 (+)
Gene ID: k141_19022_17
Type: CAZyme
Location: 14724 - 15848 (+)
Type: CAZyme
Location: 14724 - 15848 (+)
Gene ID: k141_19022_18
Type: pfam
Location: 15841 - 16638 (+)
Type: pfam
Location: 15841 - 16638 (+)
Gene ID: k141_19022_19
Type: CAZyme
Location: 16664 - 17665 (+)
Type: CAZyme
Location: 16664 - 17665 (+)
Gene ID: k141_19022_20
Type: CAZyme
Location: 17678 - 18655 (+)
Type: CAZyme
Location: 17678 - 18655 (+)
Gene ID: k141_19022_21
Type: pfam
Location: 18696 - 20249 (-)
Type: pfam
Location: 18696 - 20249 (-)
Gene ID: k141_19022_22
Type: CAZyme
Location: 20431 - 21435 (+)
Type: CAZyme
Location: 20431 - 21435 (+)
Gene ID: k141_19022_23
Type: TC
Location: 21430 - 22698 (-)
Type: TC
Location: 21430 - 22698 (-)
Gene ID: k141_19022_24
Type: pfam
Location: 22814 - 23623 (+)
Type: pfam
Location: 22814 - 23623 (+)
Gene ID: k141_19022_25
Type: pfam
Location: 23627 - 24112 (-)
Type: pfam
Location: 23627 - 24112 (-)
Gene ID: k141_19022_26
Type: CAZyme
Location: 24279 - 25604 (+)
Type: CAZyme
Location: 24279 - 25604 (+)
Gene ID: k141_19022_27
Type: pfam
Location: 25812 - 27275 (+)
Type: pfam
Location: 25812 - 27275 (+)
Gene ID: k141_19022_28
Type: CAZyme
Location: 27371 - 28333 (-)
Type: CAZyme
Location: 27371 - 28333 (-)
Gene ID: k141_19022_29
Type: CAZyme
Location: 28333 - 29334 (-)
Type: CAZyme
Location: 28333 - 29334 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Providencia
Species
Providencia alcalifaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.