Cluster: CGMR018657_CGC51
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR018657
- CGC Family ID: CGCFAM_00123
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_65154 | k141_65154_240 | 259300 | 260640 | + | 2.A.8.1.8 |
| TC | k141_65154 | k141_65154_241 | 260681 | 261274 | - | 2.A.95.1.5 |
| pfam | k141_65154 | k141_65154_242 | 261443 | 262549 | + | Semialdhyde_dh | Semialdhyde_dhC |
| CAZyme | k141_65154 | k141_65154_243 | 262817 | 265012 | + | CBM48 | GH13_9 |
| CAZyme | k141_65154 | k141_65154_244 | 265002 | 266981 | + | GH13_11 |
| pfam | k141_65154 | k141_65154_245 | 266995 | 268278 | + | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | k141_65154 | k141_65154_246 | 268377 | 269810 | + | GT5 |
| CAZyme | k141_65154 | k141_65154_247 | 269823 | 272270 | + | GT35 |
| NULL(UNKNOWN) | k141_65154 | k141_65154_248 | 272339 | 272800 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_65154 | k141_65154_249 | 272791 | 274314 | - | 9.B.34.1.2 |
| pfam | k141_65154 | k141_65154_250 | 274498 | 276015 | - | DAO | DAO_C |
| STP | k141_65154 | k141_65154_251 | 276237 | 276566 | + | Rhodanese |
| TC | k141_65154 | k141_65154_252 | 276642 | 277472 | + | 9.B.104.1.1 |
| TF | k141_65154 | k141_65154_253 | 277498 | 278256 | + | HTH_DeoR |
| TF | k141_65154 | k141_65154_254 | 278465 | 281170 | - | GerE |
| CAZyme | k141_65154 | k141_65154_255 | 281769 | 284171 | + | GT35 |
| CAZyme | k141_65154 | k141_65154_256 | 284182 | 286290 | + | GH77 |
Gene ID: k141_65154_240
Type: TC
Location: 259300 - 260640 (+)
Type: TC
Location: 259300 - 260640 (+)
Gene ID: k141_65154_241
Type: TC
Location: 260681 - 261274 (-)
Type: TC
Location: 260681 - 261274 (-)
Gene ID: k141_65154_242
Type: pfam
Location: 261443 - 262549 (+)
Type: pfam
Location: 261443 - 262549 (+)
Gene ID: k141_65154_243
Type: CAZyme
Location: 262817 - 265012 (+)
Type: CAZyme
Location: 262817 - 265012 (+)
Gene ID: k141_65154_244
Type: CAZyme
Location: 265002 - 266981 (+)
Type: CAZyme
Location: 265002 - 266981 (+)
Gene ID: k141_65154_245
Type: pfam
Location: 266995 - 268278 (+)
Type: pfam
Location: 266995 - 268278 (+)
Gene ID: k141_65154_246
Type: CAZyme
Location: 268377 - 269810 (+)
Type: CAZyme
Location: 268377 - 269810 (+)
Gene ID: k141_65154_247
Type: CAZyme
Location: 269823 - 272270 (+)
Type: CAZyme
Location: 269823 - 272270 (+)
Gene ID: k141_65154_248
Type:
Location: 272339 - 272800 (+)
Type:
Location: 272339 - 272800 (+)
Gene ID: k141_65154_249
Type: TC
Location: 272791 - 274314 (-)
Type: TC
Location: 272791 - 274314 (-)
Gene ID: k141_65154_250
Type: pfam
Location: 274498 - 276015 (-)
Type: pfam
Location: 274498 - 276015 (-)
Gene ID: k141_65154_251
Type: STP
Location: 276237 - 276566 (+)
Type: STP
Location: 276237 - 276566 (+)
Gene ID: k141_65154_252
Type: TC
Location: 276642 - 277472 (+)
Type: TC
Location: 276642 - 277472 (+)
Gene ID: k141_65154_253
Type: TF
Location: 277498 - 278256 (+)
Type: TF
Location: 277498 - 278256 (+)
Gene ID: k141_65154_254
Type: TF
Location: 278465 - 281170 (-)
Type: TF
Location: 278465 - 281170 (-)
Gene ID: k141_65154_255
Type: CAZyme
Location: 281769 - 284171 (+)
Type: CAZyme
Location: 281769 - 284171 (+)
Gene ID: k141_65154_256
Type: CAZyme
Location: 284182 - 286290 (+)
Type: CAZyme
Location: 284182 - 286290 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Cronobacter
Species
Cronobacter sakazakii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_65154_245 | vegetarian > vegan | 1.12721 | 0.03071 |
| k141_65154_254 | vegetarian > omnivore | 1.05814 | 0.02456 |