Cluster: CGMR018657_CGC41
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR018657
- CGC Family ID: CGCFAM_00434
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_71843 | k141_71843_2 | 1350 | 1970 | + | 2.A.76.1.1 |
| pfam | k141_71843 | k141_71843_3 | 2092 | 2751 | + | HTH_46 |
| pfam | k141_71843 | k141_71843_4 | 2899 | 4077 | + | Thiolase_N | ketoacyl-synt | Thiolase_C |
| TC | k141_71843 | k141_71843_5 | 4440 | 5120 | + | 1.B.35.1.5 |
| CAZyme | k141_71843 | k141_71843_6 | 5361 | 6539 | - | PL22 | PL22 |
| pfam | k141_71843 | k141_71843_7 | 7149 | 7910 | + | adh_short | KR | adh_short_C2 |
| TC | k141_71843 | k141_71843_8 | 8187 | 9476 | - | 3.A.1.1.11 |
| TC | k141_71843 | k141_71843_9 | 9490 | 10617 | - | 3.A.1.1.11 |
| TC | k141_71843 | k141_71843_10 | 10630 | 11532 | - | 3.A.1.1.11 |
| TC | k141_71843 | k141_71843_11 | 11525 | 12415 | - | 3.A.1.1.11 |
Gene ID: k141_71843_2
Type: TC
Location: 1350 - 1970 (+)
Type: TC
Location: 1350 - 1970 (+)
Gene ID: k141_71843_3
Type: pfam
Location: 2092 - 2751 (+)
Type: pfam
Location: 2092 - 2751 (+)
Gene ID: k141_71843_4
Type: pfam
Location: 2899 - 4077 (+)
Type: pfam
Location: 2899 - 4077 (+)
Gene ID: k141_71843_5
Type: TC
Location: 4440 - 5120 (+)
Type: TC
Location: 4440 - 5120 (+)
Gene ID: k141_71843_6
Type: CAZyme
Location: 5361 - 6539 (-)
Type: CAZyme
Location: 5361 - 6539 (-)
Gene ID: k141_71843_7
Type: pfam
Location: 7149 - 7910 (+)
Type: pfam
Location: 7149 - 7910 (+)
Gene ID: k141_71843_8
Type: TC
Location: 8187 - 9476 (-)
Type: TC
Location: 8187 - 9476 (-)
Gene ID: k141_71843_9
Type: TC
Location: 9490 - 10617 (-)
Type: TC
Location: 9490 - 10617 (-)
Gene ID: k141_71843_10
Type: TC
Location: 10630 - 11532 (-)
Type: TC
Location: 10630 - 11532 (-)
Gene ID: k141_71843_11
Type: TC
Location: 11525 - 12415 (-)
Type: TC
Location: 11525 - 12415 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Cronobacter
Species
Cronobacter sakazakii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_71843_7 | vegetarian > vegan | 1.08619 | 0.03071 |
| k141_71843_8 | vegetarian > omnivore | 1.92540 | 0.02456 |
| k141_71843_8 | vegetarian > vegan | 1.40319 | 0.03071 |
| k141_71843_10 | vegetarian > omnivore | 1.34746 | 0.02456 |