Cluster: CGMR018657_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: galactan
- Genome ID: CGMR018657
- CGC Family ID: CGCFAM_00933
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_180643 | k141_180643_31 | 28155 | 28817 | - | 2.A.78.2.3 |
| TF | k141_180643 | k141_180643_32 | 28920 | 29468 | + | HTH_3 |
| TF | k141_180643 | k141_180643_33 | 29544 | 30551 | + | LacI |
| CAZyme | k141_180643 | k141_180643_34 | 30669 | 32792 | + | GH36 |
| TC | k141_180643 | k141_180643_35 | 32850 | 34112 | + | 2.A.1.5.4 |
Gene ID: k141_180643_31
Type: TC
Location: 28155 - 28817 (-)
Type: TC
Location: 28155 - 28817 (-)
Gene ID: k141_180643_32
Type: TF
Location: 28920 - 29468 (+)
Type: TF
Location: 28920 - 29468 (+)
Gene ID: k141_180643_33
Type: TF
Location: 29544 - 30551 (+)
Type: TF
Location: 29544 - 30551 (+)
Gene ID: k141_180643_34
Type: CAZyme
Location: 30669 - 32792 (+)
Type: CAZyme
Location: 30669 - 32792 (+)
Gene ID: k141_180643_35
Type: TC
Location: 32850 - 34112 (+)
Type: TC
Location: 32850 - 34112 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Cronobacter
Species
Cronobacter sakazakii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_180643_35 | vegetarian > omnivore | 3.96579 | 0.01604 |
| k141_180643_35 | vegetarian > vegan | 1.99365 | 0.02815 |