Cluster: CGMR018611_CGC149
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR018611
- CGC Family ID: CGCFAM_00345
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_47339 | k141_47339_1 | 306 | 2048 | + | 9.B.33.1.1 |
| TF | k141_47339 | k141_47339_2 | 2050 | 3747 | + | HTH_AraC | HTH_AraC |
| TC | k141_47339 | k141_47339_3 | 3895 | 5625 | + | 3.A.1.1.9 |
| TC | k141_47339 | k141_47339_4 | 5700 | 6599 | + | 3.A.1.1.9 |
| TC | k141_47339 | k141_47339_5 | 6614 | 7492 | + | 3.A.1.1.9 |
| CAZyme | k141_47339 | k141_47339_6 | 7489 | 8913 | + | GH43_35 |
| CAZyme | k141_47339 | k141_47339_7 | 8927 | 10471 | + | CBM91 | GH43_10 |
| TF | k141_47339 | k141_47339_8 | 10563 | 12095 | - | 0035607 | 0035607 |
| TC | k141_47339 | k141_47339_9 | 12067 | 13872 | - | 8.A.59.2.1 |
| STP | k141_47339 | k141_47339_10 | 14137 | 15519 | + | SBP_bac_1 |
| TC | k141_47339 | k141_47339_11 | 15613 | 16506 | + | 3.A.1.1.11 |
| TC | k141_47339 | k141_47339_12 | 16510 | 17355 | + | 3.A.1.1.11 |
| CAZyme | k141_47339 | k141_47339_13 | 17370 | 18887 | + | GH39 |
Gene ID: k141_47339_1
Type: TC
Location: 306 - 2048 (+)
Type: TC
Location: 306 - 2048 (+)
Gene ID: k141_47339_2
Type: TF
Location: 2050 - 3747 (+)
Type: TF
Location: 2050 - 3747 (+)
Gene ID: k141_47339_3
Type: TC
Location: 3895 - 5625 (+)
Type: TC
Location: 3895 - 5625 (+)
Gene ID: k141_47339_4
Type: TC
Location: 5700 - 6599 (+)
Type: TC
Location: 5700 - 6599 (+)
Gene ID: k141_47339_5
Type: TC
Location: 6614 - 7492 (+)
Type: TC
Location: 6614 - 7492 (+)
Gene ID: k141_47339_6
Type: CAZyme
Location: 7489 - 8913 (+)
Type: CAZyme
Location: 7489 - 8913 (+)
Gene ID: k141_47339_7
Type: CAZyme
Location: 8927 - 10471 (+)
Type: CAZyme
Location: 8927 - 10471 (+)
Gene ID: k141_47339_8
Type: TF
Location: 10563 - 12095 (-)
Type: TF
Location: 10563 - 12095 (-)
Gene ID: k141_47339_9
Type: TC
Location: 12067 - 13872 (-)
Type: TC
Location: 12067 - 13872 (-)
Gene ID: k141_47339_10
Type: STP
Location: 14137 - 15519 (+)
Type: STP
Location: 14137 - 15519 (+)
Gene ID: k141_47339_11
Type: TC
Location: 15613 - 16506 (+)
Type: TC
Location: 15613 - 16506 (+)
Gene ID: k141_47339_12
Type: TC
Location: 16510 - 17355 (+)
Type: TC
Location: 16510 - 17355 (+)
Gene ID: k141_47339_13
Type: CAZyme
Location: 17370 - 18887 (+)
Type: CAZyme
Location: 17370 - 18887 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.