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Cluster: CGMR018611_CGC116

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_89415 k141_89415_28 40616 41215 + 3.A.1.28.1
pfam k141_89415 k141_89415_29 41331 42137 + CbiQ
TC k141_89415 k141_89415_30 42125 42985 + 3.A.1.26.7
TC k141_89415 k141_89415_31 42982 43806 + 3.A.1.23.2
CAZyme k141_89415 k141_89415_32 43789 45342 - GH78
TF k141_89415 k141_89415_33 45518 46570 - HTH_AraC
CAZyme k141_89415 k141_89415_34 46684 48579 - GH172
CAZyme k141_89415 k141_89415_35 48576 49868 - GH140
CAZyme k141_89415 k141_89415_36 49966 52395 - GH2
CAZyme k141_89415 k141_89415_37 52569 53936 - GH1
CAZyme k141_89415 k141_89415_38 53949 54902 - CE7
CAZyme k141_89415 k141_89415_39 54953 58639 - GH2
pfam k141_89415 k141_89415_40 58673 59464 - DeoC
pfam k141_89415 k141_89415_41 59496 60992 - FGGY_N | FGGY_C
CAZyme k141_89415 k141_89415_42 61000 64161 - GH106
pfam k141_89415 k141_89415_43 64177 65622 - Fucose_iso_C | Fucose_iso_N1 | Fucose_iso_N2
pfam k141_89415 k141_89415_44 65623 66504 - AP_endonuc_2
CAZyme k141_89415 k141_89415_45 66517 67593 - GH177
TF k141_89415 k141_89415_46 67887 69497 + HTH_AraC | HTH_AraC
TC k141_89415 k141_89415_47 69497 71338 + 8.A.59.2.1
TC k141_89415 k141_89415_48 71438 73216 - 3.A.1.1.10
TC k141_89415 k141_89415_49 73296 74165 - 3.A.1.1.29
TC k141_89415 k141_89415_50 74177 75094 - 3.A.1.1.29
Gene ID: k141_89415_28
Type: TC
Location: 40616 - 41215 (+)
Gene ID: k141_89415_29
Type: pfam
Location: 41331 - 42137 (+)
Gene ID: k141_89415_30
Type: TC
Location: 42125 - 42985 (+)
Gene ID: k141_89415_31
Type: TC
Location: 42982 - 43806 (+)
Gene ID: k141_89415_32
Type: CAZyme
Location: 43789 - 45342 (-)
Gene ID: k141_89415_33
Type: TF
Location: 45518 - 46570 (-)
Gene ID: k141_89415_34
Type: CAZyme
Location: 46684 - 48579 (-)
Gene ID: k141_89415_35
Type: CAZyme
Location: 48576 - 49868 (-)
Gene ID: k141_89415_36
Type: CAZyme
Location: 49966 - 52395 (-)
Gene ID: k141_89415_37
Type: CAZyme
Location: 52569 - 53936 (-)
Gene ID: k141_89415_38
Type: CAZyme
Location: 53949 - 54902 (-)
Gene ID: k141_89415_39
Type: CAZyme
Location: 54953 - 58639 (-)
Gene ID: k141_89415_40
Type: pfam
Location: 58673 - 59464 (-)
Gene ID: k141_89415_41
Type: pfam
Location: 59496 - 60992 (-)
Gene ID: k141_89415_42
Type: CAZyme
Location: 61000 - 64161 (-)
Gene ID: k141_89415_43
Type: pfam
Location: 64177 - 65622 (-)
Gene ID: k141_89415_44
Type: pfam
Location: 65623 - 66504 (-)
Gene ID: k141_89415_45
Type: CAZyme
Location: 66517 - 67593 (-)
Gene ID: k141_89415_46
Type: TF
Location: 67887 - 69497 (+)
Gene ID: k141_89415_47
Type: TC
Location: 69497 - 71338 (+)
Gene ID: k141_89415_48
Type: TC
Location: 71438 - 73216 (-)
Gene ID: k141_89415_49
Type: TC
Location: 73296 - 74165 (-)
Gene ID: k141_89415_50
Type: TC
Location: 74177 - 75094 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Robinsoniella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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