Cluster: CGMR018611_CGC105
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR018611
- CGC Family ID: CGCFAM_02642
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_18221 | k141_18221_33 | 36229 | 42882 | + | CBM32 | CBM67 | CBM67 | GH78 |
| CAZyme | k141_18221 | k141_18221_34 | 43030 | 48549 | + | CBM67 | GH78 |
| CAZyme | k141_18221 | k141_18221_35 | 48647 | 54877 | + | CBM67 | GH78 |
| CAZyme | k141_18221 | k141_18221_36 | 54999 | 62015 | + | CBM67 | GH78 |
| peptidase | k141_18221 | k141_18221_37 | 62129 | 63928 | + | C40.UPW |
| TC | k141_18221 | k141_18221_38 | 64079 | 65926 | - | 8.A.59.2.1 |
| TF | k141_18221 | k141_18221_39 | 65923 | 67473 | - | HTH_AraC | HTH_AraC |
| TF | k141_18221 | k141_18221_40 | 67556 | 69007 | - | HTH_AraC |
| TC | k141_18221 | k141_18221_41 | 69319 | 70821 | + | 3.A.1.2.20 |
| TC | k141_18221 | k141_18221_42 | 70843 | 71844 | + | 3.A.1.2.9 |
| TC | k141_18221 | k141_18221_43 | 71847 | 72860 | + | 3.A.1.2.15 |
| TC | k141_18221 | k141_18221_44 | 72939 | 74117 | + | 3.A.1.2.9 |
| pfam | k141_18221 | k141_18221_45 | 74344 | 74655 | + | rhaM |
| pfam | k141_18221 | k141_18221_46 | 74848 | 76059 | - | Peripla_BP_4 |
| TC | k141_18221 | k141_18221_47 | 76155 | 77417 | - | 3.A.1.2.8 |
| TC | k141_18221 | k141_18221_48 | 77417 | 78421 | - | 3.A.1.2.9 |
| TC | k141_18221 | k141_18221_49 | 78425 | 79933 | - | 3.A.1.2.20 |
Gene ID: k141_18221_33
Type: CAZyme
Location: 36229 - 42882 (+)
Type: CAZyme
Location: 36229 - 42882 (+)
Gene ID: k141_18221_34
Type: CAZyme
Location: 43030 - 48549 (+)
Type: CAZyme
Location: 43030 - 48549 (+)
Gene ID: k141_18221_35
Type: CAZyme
Location: 48647 - 54877 (+)
Type: CAZyme
Location: 48647 - 54877 (+)
Gene ID: k141_18221_36
Type: CAZyme
Location: 54999 - 62015 (+)
Type: CAZyme
Location: 54999 - 62015 (+)
Gene ID: k141_18221_37
Type: peptidase
Location: 62129 - 63928 (+)
Type: peptidase
Location: 62129 - 63928 (+)
Gene ID: k141_18221_38
Type: TC
Location: 64079 - 65926 (-)
Type: TC
Location: 64079 - 65926 (-)
Gene ID: k141_18221_39
Type: TF
Location: 65923 - 67473 (-)
Type: TF
Location: 65923 - 67473 (-)
Gene ID: k141_18221_40
Type: TF
Location: 67556 - 69007 (-)
Type: TF
Location: 67556 - 69007 (-)
Gene ID: k141_18221_41
Type: TC
Location: 69319 - 70821 (+)
Type: TC
Location: 69319 - 70821 (+)
Gene ID: k141_18221_42
Type: TC
Location: 70843 - 71844 (+)
Type: TC
Location: 70843 - 71844 (+)
Gene ID: k141_18221_43
Type: TC
Location: 71847 - 72860 (+)
Type: TC
Location: 71847 - 72860 (+)
Gene ID: k141_18221_44
Type: TC
Location: 72939 - 74117 (+)
Type: TC
Location: 72939 - 74117 (+)
Gene ID: k141_18221_45
Type: pfam
Location: 74344 - 74655 (+)
Type: pfam
Location: 74344 - 74655 (+)
Gene ID: k141_18221_46
Type: pfam
Location: 74848 - 76059 (-)
Type: pfam
Location: 74848 - 76059 (-)
Gene ID: k141_18221_47
Type: TC
Location: 76155 - 77417 (-)
Type: TC
Location: 76155 - 77417 (-)
Gene ID: k141_18221_48
Type: TC
Location: 77417 - 78421 (-)
Type: TC
Location: 77417 - 78421 (-)
Gene ID: k141_18221_49
Type: TC
Location: 78425 - 79933 (-)
Type: TC
Location: 78425 - 79933 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.