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Cluster: CGMR017821_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_108172 k141_108172_3 1008 4136 - GH106
CAZyme k141_108172 k141_108172_4 4169 5188 - GH33
TF k141_108172 k141_108172_5 5367 6272 - HTH_1
TC k141_108172 k141_108172_6 6500 7294 - 3.A.1.34.1
TC k141_108172 k141_108172_7 7295 8194 - 3.A.1.34.1
pfam k141_108172 k141_108172_8 8300 9277 - ABC_sub_bind
TC k141_108172 k141_108172_9 9481 10383 - 3.A.1.1.29
TC k141_108172 k141_108172_10 10398 11339 - 3.A.1.1.29
NULL(UNKNOWN) k141_108172 k141_108172_11 11441 13138 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme k141_108172 k141_108172_12 13423 15669 + GH35
Gene ID: k141_108172_3
Type: CAZyme
Location: 1008 - 4136 (-)
Gene ID: k141_108172_4
Type: CAZyme
Location: 4169 - 5188 (-)
Gene ID: k141_108172_5
Type: TF
Location: 5367 - 6272 (-)
Gene ID: k141_108172_6
Type: TC
Location: 6500 - 7294 (-)
Gene ID: k141_108172_7
Type: TC
Location: 7295 - 8194 (-)
Gene ID: k141_108172_8
Type: pfam
Location: 8300 - 9277 (-)
Gene ID: k141_108172_9
Type: TC
Location: 9481 - 10383 (-)
Gene ID: k141_108172_10
Type: TC
Location: 10398 - 11339 (-)
Gene ID: k141_108172_11
Type:
Location: 11441 - 13138 (-)
Gene ID: k141_108172_12
Type: CAZyme
Location: 13423 - 15669 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_108172_8 omnivore > vegan 1.42659 0.02753

🧭 Explore Read Mapping of CGC

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