Cluster: CGMR016612_CGC32
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR016612
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_147315 | k141_147315_214 | 251044 | 254007 | - | GH24 |
| TC | k141_147315 | k141_147315_215 | 254017 | 256047 | - | 3.A.23.1.1 |
| pfam | k141_147315 | k141_147315_216 | 256075 | 256362 | - | PAAR_motif |
| pfam | k141_147315 | k141_147315_217 | 256403 | 257815 | - | ImpA_N | VasL |
| TC | k141_147315 | k141_147315_218 | 257862 | 261359 | - | 3.A.23.1.1 |
| TC | k141_147315 | k141_147315_219 | 261385 | 262806 | - | 3.A.23.1.1 |
| pfam | k141_147315 | k141_147315_220 | 262815 | 263423 | - | VasI |
| TF | k141_147315 | k141_147315_221 | 263420 | 264961 | - | HTH_8 |
| TC | k141_147315 | k141_147315_222 | 264964 | 267570 | - | 3.A.23.1.1 |
| TC | k141_147315 | k141_147315_223 | 267588 | 268364 | - | 3.A.23.1.1 |
| TC | k141_147315 | k141_147315_224 | 268373 | 269713 | - | 3.A.23.1.1 |
| pfam | k141_147315 | k141_147315_225 | 269716 | 270231 | - | T6SS-SciN |
| TC | k141_147315 | k141_147315_226 | 270231 | 271472 | - | 3.A.23.1.1 |
| TC | k141_147315 | k141_147315_227 | 271475 | 272473 | - | 3.A.23.1.1 |
| TC | k141_147315 | k141_147315_228 | 272437 | 274209 | - | 3.A.23.1.1 |
| pfam | k141_147315 | k141_147315_229 | 274216 | 274647 | - | GPW_gp25 |
| TC | k141_147315 | k141_147315_230 | 274653 | 276131 | - | 3.A.23.2.1 |
Gene ID: k141_147315_214
Type: CAZyme
Location: 251044 - 254007 (-)
Type: CAZyme
Location: 251044 - 254007 (-)
Gene ID: k141_147315_215
Type: TC
Location: 254017 - 256047 (-)
Type: TC
Location: 254017 - 256047 (-)
Gene ID: k141_147315_216
Type: pfam
Location: 256075 - 256362 (-)
Type: pfam
Location: 256075 - 256362 (-)
Gene ID: k141_147315_217
Type: pfam
Location: 256403 - 257815 (-)
Type: pfam
Location: 256403 - 257815 (-)
Gene ID: k141_147315_218
Type: TC
Location: 257862 - 261359 (-)
Type: TC
Location: 257862 - 261359 (-)
Gene ID: k141_147315_219
Type: TC
Location: 261385 - 262806 (-)
Type: TC
Location: 261385 - 262806 (-)
Gene ID: k141_147315_220
Type: pfam
Location: 262815 - 263423 (-)
Type: pfam
Location: 262815 - 263423 (-)
Gene ID: k141_147315_221
Type: TF
Location: 263420 - 264961 (-)
Type: TF
Location: 263420 - 264961 (-)
Gene ID: k141_147315_222
Type: TC
Location: 264964 - 267570 (-)
Type: TC
Location: 264964 - 267570 (-)
Gene ID: k141_147315_223
Type: TC
Location: 267588 - 268364 (-)
Type: TC
Location: 267588 - 268364 (-)
Gene ID: k141_147315_224
Type: TC
Location: 268373 - 269713 (-)
Type: TC
Location: 268373 - 269713 (-)
Gene ID: k141_147315_225
Type: pfam
Location: 269716 - 270231 (-)
Type: pfam
Location: 269716 - 270231 (-)
Gene ID: k141_147315_226
Type: TC
Location: 270231 - 271472 (-)
Type: TC
Location: 270231 - 271472 (-)
Gene ID: k141_147315_227
Type: TC
Location: 271475 - 272473 (-)
Type: TC
Location: 271475 - 272473 (-)
Gene ID: k141_147315_228
Type: TC
Location: 272437 - 274209 (-)
Type: TC
Location: 272437 - 274209 (-)
Gene ID: k141_147315_229
Type: pfam
Location: 274216 - 274647 (-)
Type: pfam
Location: 274216 - 274647 (-)
Gene ID: k141_147315_230
Type: TC
Location: 274653 - 276131 (-)
Type: TC
Location: 274653 - 276131 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Plesiomonas
Species
Plesiomonas shigelloides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.