Cluster: CGMR016612_CGC31
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR016612
- CGC Family ID: CGCFAM_00788
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_147315 | k141_147315_180 | 207425 | 210949 | - | CBM73 |
| CAZyme | k141_147315 | k141_147315_181 | 211136 | 214189 | - | CBM73 |
| CAZyme | k141_147315 | k141_147315_182 | 214410 | 216611 | - | CBM73 | GH18 |
| CAZyme | k141_147315 | k141_147315_183 | 217438 | 218862 | - | AA10 | CBM73 |
| pfam | k141_147315 | k141_147315_184 | 219572 | 220153 | - | T2SSM |
| pfam | k141_147315 | k141_147315_185 | 220153 | 221460 | - | T2SSL | GspL_C |
| TC | k141_147315 | k141_147315_186 | 221457 | 222632 | - | 3.A.15.1.1 |
| TC | k141_147315 | k141_147315_187 | 222629 | 223261 | - | 3.A.15.1.1 |
| TC | k141_147315 | k141_147315_188 | 223306 | 223767 | - | 3.A.15.1.1 |
| pfam | k141_147315 | k141_147315_189 | 223771 | 224331 | - | N_methyl |
| TC | k141_147315 | k141_147315_190 | 224332 | 224790 | - | 3.A.15.1.1 |
| TC | k141_147315 | k141_147315_191 | 224839 | 226113 | - | 3.A.15.1.1 |
| TC | k141_147315 | k141_147315_192 | 226119 | 227696 | - | 3.A.15.1.1 |
| TC | k141_147315 | k141_147315_193 | 227689 | 229815 | - | 1.B.22.1.1 |
Gene ID: k141_147315_180
Type: CAZyme
Location: 207425 - 210949 (-)
Type: CAZyme
Location: 207425 - 210949 (-)
Gene ID: k141_147315_181
Type: CAZyme
Location: 211136 - 214189 (-)
Type: CAZyme
Location: 211136 - 214189 (-)
Gene ID: k141_147315_182
Type: CAZyme
Location: 214410 - 216611 (-)
Type: CAZyme
Location: 214410 - 216611 (-)
Gene ID: k141_147315_183
Type: CAZyme
Location: 217438 - 218862 (-)
Type: CAZyme
Location: 217438 - 218862 (-)
Gene ID: k141_147315_184
Type: pfam
Location: 219572 - 220153 (-)
Type: pfam
Location: 219572 - 220153 (-)
Gene ID: k141_147315_185
Type: pfam
Location: 220153 - 221460 (-)
Type: pfam
Location: 220153 - 221460 (-)
Gene ID: k141_147315_186
Type: TC
Location: 221457 - 222632 (-)
Type: TC
Location: 221457 - 222632 (-)
Gene ID: k141_147315_187
Type: TC
Location: 222629 - 223261 (-)
Type: TC
Location: 222629 - 223261 (-)
Gene ID: k141_147315_188
Type: TC
Location: 223306 - 223767 (-)
Type: TC
Location: 223306 - 223767 (-)
Gene ID: k141_147315_189
Type: pfam
Location: 223771 - 224331 (-)
Type: pfam
Location: 223771 - 224331 (-)
Gene ID: k141_147315_190
Type: TC
Location: 224332 - 224790 (-)
Type: TC
Location: 224332 - 224790 (-)
Gene ID: k141_147315_191
Type: TC
Location: 224839 - 226113 (-)
Type: TC
Location: 224839 - 226113 (-)
Gene ID: k141_147315_192
Type: TC
Location: 226119 - 227696 (-)
Type: TC
Location: 226119 - 227696 (-)
Gene ID: k141_147315_193
Type: TC
Location: 227689 - 229815 (-)
Type: TC
Location: 227689 - 229815 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Plesiomonas
Species
Plesiomonas shigelloides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.