Cluster: CGMR016612_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR016612
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_49439 | k141_49439_48 | 62457 | 63677 | + | GT4 |
| CAZyme | k141_49439 | k141_49439_49 | 63674 | 64993 | + | GT4 |
| CAZyme | k141_49439 | k141_49439_50 | 65005 | 66075 | - | GT4 |
| pfam | k141_49439 | k141_49439_51 | 66415 | 67428 | + | Arginase |
| TC | k141_49439 | k141_49439_52 | 67505 | 69181 | + | 8.A.59.2.1 |
| TF | k141_49439 | k141_49439_53 | 69175 | 69975 | + | LytTR |
| TC | k141_49439 | k141_49439_54 | 70106 | 71326 | + | 2.A.1.11.3 |
Gene ID: k141_49439_48
Type: CAZyme
Location: 62457 - 63677 (+)
Type: CAZyme
Location: 62457 - 63677 (+)
Gene ID: k141_49439_49
Type: CAZyme
Location: 63674 - 64993 (+)
Type: CAZyme
Location: 63674 - 64993 (+)
Gene ID: k141_49439_50
Type: CAZyme
Location: 65005 - 66075 (-)
Type: CAZyme
Location: 65005 - 66075 (-)
Gene ID: k141_49439_51
Type: pfam
Location: 66415 - 67428 (+)
Type: pfam
Location: 66415 - 67428 (+)
Gene ID: k141_49439_52
Type: TC
Location: 67505 - 69181 (+)
Type: TC
Location: 67505 - 69181 (+)
Gene ID: k141_49439_53
Type: TF
Location: 69175 - 69975 (+)
Type: TF
Location: 69175 - 69975 (+)
Gene ID: k141_49439_54
Type: TC
Location: 70106 - 71326 (+)
Type: TC
Location: 70106 - 71326 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Plesiomonas
Species
Plesiomonas shigelloides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.