Cluster: CGMR015636_CGC11
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR015636
- CGC Family ID: CGCFAM_01125
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_145426 | k141_145426_42 | 42271 | 42927 | + | 8.A.3.2.3 |
| TC | k141_145426 | k141_145426_43 | 42929 | 43834 | + | 8.A.3.1.2 |
| pfam | k141_145426 | k141_145426_44 | 43906 | 44562 | + | CpsB_CapC |
| TC | k141_145426 | k141_145426_45 | 44675 | 45439 | + | 9.B.18.1.3 |
| CAZyme | k141_145426 | k141_145426_46 | 45436 | 46206 | + | GT2 |
| CAZyme | k141_145426 | k141_145426_47 | 46212 | 47348 | + | GT4 |
| NULL(UNKNOWN) | k141_145426 | k141_145426_48 | 47351 | 48520 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_145426 | k141_145426_49 | 49047 | 50309 | + | GT4 |
Gene ID: k141_145426_42
Type: TC
Location: 42271 - 42927 (+)
Type: TC
Location: 42271 - 42927 (+)
Gene ID: k141_145426_43
Type: TC
Location: 42929 - 43834 (+)
Type: TC
Location: 42929 - 43834 (+)
Gene ID: k141_145426_44
Type: pfam
Location: 43906 - 44562 (+)
Type: pfam
Location: 43906 - 44562 (+)
Gene ID: k141_145426_45
Type: TC
Location: 44675 - 45439 (+)
Type: TC
Location: 44675 - 45439 (+)
Gene ID: k141_145426_46
Type: CAZyme
Location: 45436 - 46206 (+)
Type: CAZyme
Location: 45436 - 46206 (+)
Gene ID: k141_145426_47
Type: CAZyme
Location: 46212 - 47348 (+)
Type: CAZyme
Location: 46212 - 47348 (+)
Gene ID: k141_145426_48
Type:
Location: 47351 - 48520 (+)
Type:
Location: 47351 - 48520 (+)
Gene ID: k141_145426_49
Type: CAZyme
Location: 49047 - 50309 (+)
Type: CAZyme
Location: 49047 - 50309 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.