Cluster: CGMR015011_CGC17
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR015011
- CGC Family ID: CGCFAM_00291
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_168713 | k141_168713_2 | 1226 | 2137 | + | CE11 |
| STP | k141_168713 | k141_168713_3 | 2349 | 2987 | + | Pribosyltran |
| TC | k141_168713 | k141_168713_4 | 2990 | 4222 | + | 2.A.40.1.4 |
| STP | k141_168713 | k141_168713_5 | 4278 | 4835 | + | Pribosyltran |
| pfam | k141_168713 | k141_168713_6 | 5000 | 5446 | - | DciA |
| TC | k141_168713 | k141_168713_7 | 5627 | 6655 | + | 3.A.5.1.1 |
Gene ID: k141_168713_2
Type: CAZyme
Location: 1226 - 2137 (+)
Type: CAZyme
Location: 1226 - 2137 (+)
Gene ID: k141_168713_3
Type: STP
Location: 2349 - 2987 (+)
Type: STP
Location: 2349 - 2987 (+)
Gene ID: k141_168713_4
Type: TC
Location: 2990 - 4222 (+)
Type: TC
Location: 2990 - 4222 (+)
Gene ID: k141_168713_5
Type: STP
Location: 4278 - 4835 (+)
Type: STP
Location: 4278 - 4835 (+)
Gene ID: k141_168713_6
Type: pfam
Location: 5000 - 5446 (-)
Type: pfam
Location: 5000 - 5446 (-)
Gene ID: k141_168713_7
Type: TC
Location: 5627 - 6655 (+)
Type: TC
Location: 5627 - 6655 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Thiopseudomonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.