Cluster: CGMR015011_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR015011
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_229649 | k141_229649_1 | 3 | 671 | + | 2.A.6.2.20 |
| TC | k141_229649 | k141_229649_2 | 672 | 1883 | + | 3.A.1.125.5 |
| TC | k141_229649 | k141_229649_3 | 1876 | 2565 | + | 3.A.1.125.1 |
| NULL(UNKNOWN) | k141_229649 | k141_229649_4 | 2970 | 3092 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_229649 | k141_229649_5 | 3065 | 3856 | + | ThiF |
| CAZyme | k141_229649 | k141_229649_6 | 4069 | 5238 | + | GH73 |
Gene ID: k141_229649_1
Type: TC
Location: 3 - 671 (+)
Type: TC
Location: 3 - 671 (+)
Gene ID: k141_229649_2
Type: TC
Location: 672 - 1883 (+)
Type: TC
Location: 672 - 1883 (+)
Gene ID: k141_229649_3
Type: TC
Location: 1876 - 2565 (+)
Type: TC
Location: 1876 - 2565 (+)
Gene ID: k141_229649_4
Type:
Location: 2970 - 3092 (+)
Type:
Location: 2970 - 3092 (+)
Gene ID: k141_229649_5
Type: pfam
Location: 3065 - 3856 (+)
Type: pfam
Location: 3065 - 3856 (+)
Gene ID: k141_229649_6
Type: CAZyme
Location: 4069 - 5238 (+)
Type: CAZyme
Location: 4069 - 5238 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Thiopseudomonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.