Cluster: CGMR014146_CGC12
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR014146
- CGC Family ID: CGCFAM_03542
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_115934 | k141_115934_43 | 42983 | 44320 | - | 2.A.40.7.6 |
| pfam | k141_115934 | k141_115934_44 | 44657 | 45607 | - | Dus |
| TC | k141_115934 | k141_115934_45 | 45607 | 47628 | - | 3.A.1.121.4 |
| pfam | k141_115934 | k141_115934_46 | 47656 | 49116 | - | FGGY_N | FGGY_C |
| pfam | k141_115934 | k141_115934_47 | 49377 | 50861 | - | Fucose_iso_C |
| CAZyme | k141_115934 | k141_115934_48 | 51115 | 52785 | - | GH43_10 |
| TC | k141_115934 | k141_115934_49 | 52821 | 53474 | - | 2.A.38.4.6 |
| TC | k141_115934 | k141_115934_50 | 53494 | 54834 | - | 2.A.38.4.1 |
| STP | k141_115934 | k141_115934_51 | 54924 | 56147 | - | ACT | PALP |
| TC | k141_115934 | k141_115934_52 | 56196 | 57122 | - | 3.A.5.1.1 |
| pfam | k141_115934 | k141_115934_53 | 57158 | 60736 | - | SMC_N | SMC_hinge | AAA_15 | AAA_21 | AAA_23 |
| pfam | k141_115934 | k141_115934_54 | 60750 | 61442 | - | dsrm | Ribonuclease_3 | Ribonucleas_3_3 |
| TC | k141_115934 | k141_115934_55 | 61554 | 61784 | - | 3.D.1.6.4 |
Gene ID: k141_115934_43
Type: TC
Location: 42983 - 44320 (-)
Type: TC
Location: 42983 - 44320 (-)
Gene ID: k141_115934_44
Type: pfam
Location: 44657 - 45607 (-)
Type: pfam
Location: 44657 - 45607 (-)
Gene ID: k141_115934_45
Type: TC
Location: 45607 - 47628 (-)
Type: TC
Location: 45607 - 47628 (-)
Gene ID: k141_115934_46
Type: pfam
Location: 47656 - 49116 (-)
Type: pfam
Location: 47656 - 49116 (-)
Gene ID: k141_115934_47
Type: pfam
Location: 49377 - 50861 (-)
Type: pfam
Location: 49377 - 50861 (-)
Gene ID: k141_115934_48
Type: CAZyme
Location: 51115 - 52785 (-)
Type: CAZyme
Location: 51115 - 52785 (-)
Gene ID: k141_115934_49
Type: TC
Location: 52821 - 53474 (-)
Type: TC
Location: 52821 - 53474 (-)
Gene ID: k141_115934_50
Type: TC
Location: 53494 - 54834 (-)
Type: TC
Location: 53494 - 54834 (-)
Gene ID: k141_115934_51
Type: STP
Location: 54924 - 56147 (-)
Type: STP
Location: 54924 - 56147 (-)
Gene ID: k141_115934_52
Type: TC
Location: 56196 - 57122 (-)
Type: TC
Location: 56196 - 57122 (-)
Gene ID: k141_115934_53
Type: pfam
Location: 57158 - 60736 (-)
Type: pfam
Location: 57158 - 60736 (-)
Gene ID: k141_115934_54
Type: pfam
Location: 60750 - 61442 (-)
Type: pfam
Location: 60750 - 61442 (-)
Gene ID: k141_115934_55
Type: TC
Location: 61554 - 61784 (-)
Type: TC
Location: 61554 - 61784 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
CAG-882
Species
CAG-882 sp900545175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.