Cluster: CGMR013612_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR013612
- CGC Family ID: CGCFAM_04139
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_65324 | k141_65324_3 | 1996 | 3687 | + | GH13_31 |
| TF | k141_65324 | k141_65324_4 | 3596 | 4507 | - | HTH_AraC | HTH_AraC |
| CAZyme | k141_65324 | k141_65324_5 | 4741 | 6924 | + | GH36 |
| TC | k141_65324 | k141_65324_6 | 6964 | 8388 | + | 4.A.1.2.8 |
| TF | k141_65324 | k141_65324_7 | 8473 | 8931 | - | HTH_11 |
| TC | k141_65324 | k141_65324_8 | 9090 | 10418 | + | 2.A.66.1.4 |
Gene ID: k141_65324_3
Type: CAZyme
Location: 1996 - 3687 (+)
Type: CAZyme
Location: 1996 - 3687 (+)
Gene ID: k141_65324_4
Type: TF
Location: 3596 - 4507 (-)
Type: TF
Location: 3596 - 4507 (-)
Gene ID: k141_65324_5
Type: CAZyme
Location: 4741 - 6924 (+)
Type: CAZyme
Location: 4741 - 6924 (+)
Gene ID: k141_65324_6
Type: TC
Location: 6964 - 8388 (+)
Type: TC
Location: 6964 - 8388 (+)
Gene ID: k141_65324_7
Type: TF
Location: 8473 - 8931 (-)
Type: TF
Location: 8473 - 8931 (-)
Gene ID: k141_65324_8
Type: TC
Location: 9090 - 10418 (+)
Type: TC
Location: 9090 - 10418 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Hominiventricola
Species
Hominiventricola filiformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_65324_3 | vegetarian > vegan | 1.18029 | 0.01315 |
| k141_65324_4 | vegetarian > vegan | 1.54097 | 0.01315 |
| k141_65324_5 | vegetarian > vegan | 1.05340 | 0.01315 |
| k141_65324_6 | vegetarian > vegan | 1.11777 | 0.01315 |