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Cluster: CGMR012207_CGC60

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_6725 k141_6725_395 395935 396228 - 3.A.1.27.3
TC k141_6725 k141_6725_396 396228 396863 - 3.A.1.27.3
TC k141_6725 k141_6725_397 396881 397429 - 3.A.1.27.3
TC k141_6725 k141_6725_398 397434 398216 - 3.A.1.27.3
TC k141_6725 k141_6725_399 398224 399036 - 3.A.1.27.3
TC k141_6725 k141_6725_400 399264 400241 + 2.A.19.5.1
STP k141_6725 k141_6725_401 400255 401241 + CBS | CBS | SIS
pfam k141_6725 k141_6725_402 401256 401822 + Hydrolase_3
TC k141_6725 k141_6725_403 401819 402394 + 1.B.42.1.2
TC k141_6725 k141_6725_404 402363 402917 + 1.B.42.1.2
TC k141_6725 k141_6725_405 402924 403649 + 1.B.42.1.2
pfam k141_6725 k141_6725_406 403697 405130 + Sigma54_AID | Sigma54_DBD | Sigma54_CBD
pfam k141_6725 k141_6725_407 405153 405440 + Ribosomal_S30AE
TC k141_6725 k141_6725_408 405523 406014 + 4.A.2.1.4
pfam k141_6725 k141_6725_409 406060 406914 + RapZ-like_N | PapZ_C
TC k141_6725 k141_6725_410 406911 407183 + 8.A.8.1.5
CAZyme k141_6725 k141_6725_411 407222 407947 - GT51
peptidase k141_6725 k141_6725_412 407944 408597 - C56.975
STP k141_6725 k141_6725_413 408830 411163 - HATPase_c | HisKA | PAS | Response_reg
TC k141_6725 k141_6725_414 411299 412381 - 1.B.42.1.2
TC k141_6725 k141_6725_415 412381 413460 - 1.B.42.1.2
Gene ID: k141_6725_395
Type: TC
Location: 395935 - 396228 (-)
Gene ID: k141_6725_396
Type: TC
Location: 396228 - 396863 (-)
Gene ID: k141_6725_397
Type: TC
Location: 396881 - 397429 (-)
Gene ID: k141_6725_398
Type: TC
Location: 397434 - 398216 (-)
Gene ID: k141_6725_399
Type: TC
Location: 398224 - 399036 (-)
Gene ID: k141_6725_400
Type: TC
Location: 399264 - 400241 (+)
Gene ID: k141_6725_401
Type: STP
Location: 400255 - 401241 (+)
Gene ID: k141_6725_402
Type: pfam
Location: 401256 - 401822 (+)
Gene ID: k141_6725_403
Type: TC
Location: 401819 - 402394 (+)
Gene ID: k141_6725_404
Type: TC
Location: 402363 - 402917 (+)
Gene ID: k141_6725_405
Type: TC
Location: 402924 - 403649 (+)
Gene ID: k141_6725_406
Type: pfam
Location: 403697 - 405130 (+)
Gene ID: k141_6725_407
Type: pfam
Location: 405153 - 405440 (+)
Gene ID: k141_6725_408
Type: TC
Location: 405523 - 406014 (+)
Gene ID: k141_6725_409
Type: pfam
Location: 406060 - 406914 (+)
Gene ID: k141_6725_410
Type: TC
Location: 406911 - 407183 (+)
Gene ID: k141_6725_411
Type: CAZyme
Location: 407222 - 407947 (-)
Gene ID: k141_6725_412
Type: peptidase
Location: 407944 - 408597 (-)
Gene ID: k141_6725_413
Type: STP
Location: 408830 - 411163 (-)
Gene ID: k141_6725_414
Type: TC
Location: 411299 - 412381 (-)
Gene ID: k141_6725_415
Type: TC
Location: 412381 - 413460 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_6725_408 vegetarian > vegan 1.08986 0.04504

🧭 Explore Read Mapping of CGC

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