Cluster: CGMR012055_CGC15
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR012055
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_203981 | k141_203981_87 | 100232 | 103012 | + | GH73 |
| NULL(UNKNOWN) | k141_203981 | k141_203981_88 | 103186 | 104250 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_203981 | k141_203981_89 | 104499 | 105554 | + | 9.B.18.2.1 |
| pfam | k141_203981 | k141_203981_90 | 105556 | 106773 | + | Epimerase | Polysacc_synt_C |
| CAZyme | k141_203981 | k141_203981_91 | 106833 | 107897 | + | GT4 |
| pfam | k141_203981 | k141_203981_92 | 107919 | 109094 | + | Epimerase_2 |
| CAZyme | k141_203981 | k141_203981_93 | 109094 | 110335 | + | GT4 |
| CAZyme | k141_203981 | k141_203981_94 | 110341 | 111072 | + | GT2 |
| pfam | k141_203981 | k141_203981_95 | 111072 | 111428 | + | DUF2304 |
| pfam | k141_203981 | k141_203981_96 | 111455 | 113638 | + | DUF7654 | DUF7657 |
| CAZyme | k141_203981 | k141_203981_97 | 113715 | 116114 | - | GT2 | GT2 |
| CAZyme | k141_203981 | k141_203981_98 | 116190 | 117431 | - | GT111 |
Gene ID: k141_203981_87
Type: CAZyme
Location: 100232 - 103012 (+)
Type: CAZyme
Location: 100232 - 103012 (+)
Gene ID: k141_203981_88
Type:
Location: 103186 - 104250 (+)
Type:
Location: 103186 - 104250 (+)
Gene ID: k141_203981_89
Type: TC
Location: 104499 - 105554 (+)
Type: TC
Location: 104499 - 105554 (+)
Gene ID: k141_203981_90
Type: pfam
Location: 105556 - 106773 (+)
Type: pfam
Location: 105556 - 106773 (+)
Gene ID: k141_203981_91
Type: CAZyme
Location: 106833 - 107897 (+)
Type: CAZyme
Location: 106833 - 107897 (+)
Gene ID: k141_203981_92
Type: pfam
Location: 107919 - 109094 (+)
Type: pfam
Location: 107919 - 109094 (+)
Gene ID: k141_203981_93
Type: CAZyme
Location: 109094 - 110335 (+)
Type: CAZyme
Location: 109094 - 110335 (+)
Gene ID: k141_203981_94
Type: CAZyme
Location: 110341 - 111072 (+)
Type: CAZyme
Location: 110341 - 111072 (+)
Gene ID: k141_203981_95
Type: pfam
Location: 111072 - 111428 (+)
Type: pfam
Location: 111072 - 111428 (+)
Gene ID: k141_203981_96
Type: pfam
Location: 111455 - 113638 (+)
Type: pfam
Location: 111455 - 113638 (+)
Gene ID: k141_203981_97
Type: CAZyme
Location: 113715 - 116114 (-)
Type: CAZyme
Location: 113715 - 116114 (-)
Gene ID: k141_203981_98
Type: CAZyme
Location: 116190 - 117431 (-)
Type: CAZyme
Location: 116190 - 117431 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_203981_87 | vegan > omnivore | 1.70062 | 0.01416 |
| k141_203981_87 | vegetarian > omnivore | 2.36542 | 0.03804 |
| k141_203981_88 | vegan > omnivore | 1.38116 | 0.01416 |
| k141_203981_88 | vegetarian > omnivore | 2.35098 | 0.03804 |
| k141_203981_90 | vegetarian > omnivore | 1.28242 | 0.02517 |
| k141_203981_94 | vegan > omnivore | 1.92764 | 0.01416 |
| k141_203981_94 | vegetarian > omnivore | 3.10220 | 0.02517 |
| k141_203981_95 | vegan > omnivore | 1.44062 | 0.01416 |
| k141_203981_95 | vegetarian > omnivore | 1.83152 | 0.02704 |
| k141_203981_97 | vegan > omnivore | 2.68163 | 0.01416 |
| k141_203981_97 | vegetarian > omnivore | 3.39217 | 0.03804 |
| k141_203981_98 | vegan > omnivore | 1.46181 | 0.01416 |
| k141_203981_98 | vegetarian > omnivore | 2.12177 | 0.02517 |