Cluster: CGMR012055_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR012055
- CGC Family ID: CGCFAM_00467
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_75137 | k141_75137_48 | 46949 | 48325 | - | GH13_20 |
| TC | k141_75137 | k141_75137_49 | 48479 | 49675 | - | 2.A.1.2.18 |
| pfam | k141_75137 | k141_75137_50 | 49780 | 50262 | - | tRNA_edit |
| TC | k141_75137 | k141_75137_51 | 50358 | 52715 | - | 9.A.8.1.6 |
| NULL(UNKNOWN) | k141_75137 | k141_75137_52 | 52720 | 53337 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_75137 | k141_75137_53 | 53352 | 54815 | - | 2.A.3.2.3 |
Gene ID: k141_75137_48
Type: CAZyme
Location: 46949 - 48325 (-)
Type: CAZyme
Location: 46949 - 48325 (-)
Gene ID: k141_75137_49
Type: TC
Location: 48479 - 49675 (-)
Type: TC
Location: 48479 - 49675 (-)
Gene ID: k141_75137_50
Type: pfam
Location: 49780 - 50262 (-)
Type: pfam
Location: 49780 - 50262 (-)
Gene ID: k141_75137_51
Type: TC
Location: 50358 - 52715 (-)
Type: TC
Location: 50358 - 52715 (-)
Gene ID: k141_75137_52
Type:
Location: 52720 - 53337 (+)
Type:
Location: 52720 - 53337 (+)
Gene ID: k141_75137_53
Type: TC
Location: 53352 - 54815 (-)
Type: TC
Location: 53352 - 54815 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_75137_53 | vegan > omnivore | 1.55175 | 0.01416 |