Cluster: CGMR011584_CGC3
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR011584
- CGC Family ID: CGCFAM_08239
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_16242 | k141_16242_50 | 55690 | 56043 | - | 1.E.40.3.4 |
| TF | k141_16242 | k141_16242_51 | 56044 | 56370 | - | PspC |
| pfam | k141_16242 | k141_16242_52 | 56429 | 57496 | - | RF-1 | PCRF |
| TC | k141_16242 | k141_16242_53 | 57647 | 60007 | - | 3.A.5.1.3 |
| pfam | k141_16242 | k141_16242_54 | 60298 | 60840 | - | Ribosomal_S30AE | Ribosom_S30AE_C |
| TC | k141_16242 | k141_16242_55 | 60974 | 61651 | - | 3.A.11.1.4 |
| TC | k141_16242 | k141_16242_56 | 61644 | 62969 | - | 3.A.11.1.2 |
| pfam | k141_16242 | k141_16242_57 | 63034 | 63675 | + | UPF0029 | DUF1949 |
| NULL(UNKNOWN) | k141_16242 | k141_16242_58 | 63672 | 63932 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_16242 | k141_16242_59 | 64046 | 65884 | - | 2.A.3.14.3 |
| pfam | k141_16242 | k141_16242_60 | 66005 | 67603 | - | AA_permease | AA_permease_2 |
| TC | k141_16242 | k141_16242_61 | 67832 | 69175 | + | 2.A.1.23.2 |
| TC | k141_16242 | k141_16242_62 | 69202 | 70539 | + | 2.A.1.23.2 |
| peptidase | k141_16242 | k141_16242_63 | 70554 | 71510 | + | C59.951 |
| CAZyme | k141_16242 | k141_16242_64 | 71614 | 72861 | + | GT4 |
Gene ID: k141_16242_50
Type: TC
Location: 55690 - 56043 (-)
Type: TC
Location: 55690 - 56043 (-)
Gene ID: k141_16242_51
Type: TF
Location: 56044 - 56370 (-)
Type: TF
Location: 56044 - 56370 (-)
Gene ID: k141_16242_52
Type: pfam
Location: 56429 - 57496 (-)
Type: pfam
Location: 56429 - 57496 (-)
Gene ID: k141_16242_53
Type: TC
Location: 57647 - 60007 (-)
Type: TC
Location: 57647 - 60007 (-)
Gene ID: k141_16242_54
Type: pfam
Location: 60298 - 60840 (-)
Type: pfam
Location: 60298 - 60840 (-)
Gene ID: k141_16242_55
Type: TC
Location: 60974 - 61651 (-)
Type: TC
Location: 60974 - 61651 (-)
Gene ID: k141_16242_56
Type: TC
Location: 61644 - 62969 (-)
Type: TC
Location: 61644 - 62969 (-)
Gene ID: k141_16242_57
Type: pfam
Location: 63034 - 63675 (+)
Type: pfam
Location: 63034 - 63675 (+)
Gene ID: k141_16242_58
Type:
Location: 63672 - 63932 (-)
Type:
Location: 63672 - 63932 (-)
Gene ID: k141_16242_59
Type: TC
Location: 64046 - 65884 (-)
Type: TC
Location: 64046 - 65884 (-)
Gene ID: k141_16242_60
Type: pfam
Location: 66005 - 67603 (-)
Type: pfam
Location: 66005 - 67603 (-)
Gene ID: k141_16242_61
Type: TC
Location: 67832 - 69175 (+)
Type: TC
Location: 67832 - 69175 (+)
Gene ID: k141_16242_62
Type: TC
Location: 69202 - 70539 (+)
Type: TC
Location: 69202 - 70539 (+)
Gene ID: k141_16242_63
Type: peptidase
Location: 70554 - 71510 (+)
Type: peptidase
Location: 70554 - 71510 (+)
Gene ID: k141_16242_64
Type: CAZyme
Location: 71614 - 72861 (+)
Type: CAZyme
Location: 71614 - 72861 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Limosilactobacillus
Species
Limosilactobacillus portuensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.