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Cluster: CGMR011584_CGC15

Cluster Details
Gene Composition
Taxonomic Lineage
Gene level Read Mapping
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🧬 Cluster Details

Gene Count: 20
CAZyme Count: 7
Substrate:
Genome ID: CGMR011584
Continent: Asia
Source Study: Huang et al., 2024 →

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	k141_66805	k141_66805_37	43413	44900	-	2.A.15.1.7
pfam	k141_66805	k141_66805_38	44905	45618	-	NTP_transferase \| NTP_transf_3
TF	k141_66805	k141_66805_39	45620	47356	-	0043935
CAZyme	k141_66805	k141_66805_40	47502	48539	+	GT4
CAZyme	k141_66805	k141_66805_41	48563	49666	-	GT4
CAZyme	k141_66805	k141_66805_42	49683	50540	-	GT14
pfam	k141_66805	k141_66805_43	50559	51365	-	LicD
pfam	k141_66805	k141_66805_44	51480	53609	-	Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Peptidase_C39_2 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3 \| KxYKxGKxW_sig
CAZyme	k141_66805	k141_66805_45	53791	55884	+	GH25
pfam	k141_66805	k141_66805_46	55965	57176	-	Zn_Ribbon_1 \| Zn_ribbon_3
STP	k141_66805	k141_66805_47	57663	59429	-	Peptidase_M23
TC	k141_66805	k141_66805_48	59565	60986	-	2.A.66.2.16
STP	k141_66805	k141_66805_49	60993	62111	-	Pyr_redox
NULL(UNKNOWN)	k141_66805	k141_66805_50	62292	62735	+	NULL(UNKNOWN) [View Structural Homologs]
CAZyme	k141_66805	k141_66805_51	62797	63813	-	GT113
NULL(UNKNOWN)	k141_66805	k141_66805_52	63818	64462	-	NULL(UNKNOWN) [View Structural Homologs]
NULL(UNKNOWN)	k141_66805	k141_66805_53	64440	65657	-	NULL(UNKNOWN) [View Structural Homologs]
CAZyme	k141_66805	k141_66805_54	65670	66599	-	GT2
CAZyme	k141_66805	k141_66805_55	66617	67378	-	GT111
TC	k141_66805	k141_66805_56	67390	68043	-	9.B.18.1.2

Gene ID: k141_66805_37
Type: TC
Location: 43413 - 44900 (-)

Gene ID: k141_66805_38
Type: pfam
Location: 44905 - 45618 (-)

Gene ID: k141_66805_39
Type: TF
Location: 45620 - 47356 (-)

Gene ID: k141_66805_40
Type: CAZyme
Location: 47502 - 48539 (+)

Gene ID: k141_66805_41
Type: CAZyme
Location: 48563 - 49666 (-)

Gene ID: k141_66805_42
Type: CAZyme
Location: 49683 - 50540 (-)

Gene ID: k141_66805_43
Type: pfam
Location: 50559 - 51365 (-)

Gene ID: k141_66805_44
Type: pfam
Location: 51480 - 53609 (-)

Gene ID: k141_66805_45
Type: CAZyme
Location: 53791 - 55884 (+)

Gene ID: k141_66805_46
Type: pfam
Location: 55965 - 57176 (-)

Gene ID: k141_66805_47
Type: STP
Location: 57663 - 59429 (-)

Gene ID: k141_66805_48
Type: TC
Location: 59565 - 60986 (-)

Gene ID: k141_66805_49
Type: STP
Location: 60993 - 62111 (-)

Gene ID: k141_66805_50
Type:
Location: 62292 - 62735 (+)

Gene ID: k141_66805_51
Type: CAZyme
Location: 62797 - 63813 (-)

Gene ID: k141_66805_52
Type:
Location: 63818 - 64462 (-)

Gene ID: k141_66805_53
Type:
Location: 64440 - 65657 (-)

Gene ID: k141_66805_54
Type: CAZyme
Location: 65670 - 66599 (-)

Gene ID: k141_66805_55
Type: CAZyme
Location: 66617 - 67378 (-)

Gene ID: k141_66805_56
Type: TC
Location: 67390 - 68043 (-)

Taxonomic Lineage

Domain

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Phylum

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Class

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Order

Lactobacillales

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Family

Lactobacillaceae

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Genus

Limosilactobacillus

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Species

Limosilactobacillus portuensis

Gene Level Read Mapping

Diet (De Filippis et al., 2019)
Diet (Huang et al., 2024)
IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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