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Cluster: CGMR011562_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_17351 k141_17351_38 47676 50003 - 1.B.14.6.12
TC k141_17351 k141_17351_39 50200 51117 - 9.B.168.1.1
TC k141_17351 k141_17351_40 51572 51823 + 1.E.43.1.10
TF k141_17351 k141_17351_41 52008 52754 - LytTR
pfam k141_17351 k141_17351_42 52751 53758 - His_kinase
TC k141_17351 k141_17351_43 54048 55148 + 2.A.6.2.29
TC k141_17351 k141_17351_44 55157 58300 + 2.A.6.2.22
TC k141_17351 k141_17351_45 58318 59697 + 2.A.6.2.23
peptidase k141_17351 k141_17351_46 59937 61325 - S33.UPW
STP k141_17351 k141_17351_47 61479 64265 - HATPase_c | HisKA | Response_reg
CAZyme k141_17351 k141_17351_48 64398 66698 + GH35
TC k141_17351 k141_17351_49 66807 67847 + 9.B.97.3.1
Gene ID: k141_17351_38
Type: TC
Location: 47676 - 50003 (-)
Gene ID: k141_17351_39
Type: TC
Location: 50200 - 51117 (-)
Gene ID: k141_17351_40
Type: TC
Location: 51572 - 51823 (+)
Gene ID: k141_17351_41
Type: TF
Location: 52008 - 52754 (-)
Gene ID: k141_17351_42
Type: pfam
Location: 52751 - 53758 (-)
Gene ID: k141_17351_43
Type: TC
Location: 54048 - 55148 (+)
Gene ID: k141_17351_44
Type: TC
Location: 55157 - 58300 (+)
Gene ID: k141_17351_45
Type: TC
Location: 58318 - 59697 (+)
Gene ID: k141_17351_46
Type: peptidase
Location: 59937 - 61325 (-)
Gene ID: k141_17351_47
Type: STP
Location: 61479 - 64265 (-)
Gene ID: k141_17351_48
Type: CAZyme
Location: 64398 - 66698 (+)
Gene ID: k141_17351_49
Type: TC
Location: 66807 - 67847 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_17351_49 vegan > omnivore 2.89430 0.04329

🧭 Explore Read Mapping of CGC

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