Cluster: CGMR011407_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR011407
- CGC Family ID: CGCFAM_00568
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_103344 | k141_103344_40 | 43809 | 44885 | - | GT4 |
| CAZyme | k141_103344 | k141_103344_41 | 44882 | 45646 | - | GT2 |
| CAZyme | k141_103344 | k141_103344_42 | 45643 | 46734 | - | GT9 |
| pfam | k141_103344 | k141_103344_43 | 46802 | 50266 | - | tRNA_anti-codon | PHP | DNA_pol3_alpha | HHH_6 | DNA_pol3_finger |
| TC | k141_103344 | k141_103344_44 | 50328 | 51743 | - | 1.I.1.1.3 |
| NULL(UNKNOWN) | k141_103344 | k141_103344_45 | 52143 | 53075 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_103344 | k141_103344_46 | 53237 | 54631 | + | 9.B.145.1.2 |
Gene ID: k141_103344_40
Type: CAZyme
Location: 43809 - 44885 (-)
Type: CAZyme
Location: 43809 - 44885 (-)
Gene ID: k141_103344_41
Type: CAZyme
Location: 44882 - 45646 (-)
Type: CAZyme
Location: 44882 - 45646 (-)
Gene ID: k141_103344_42
Type: CAZyme
Location: 45643 - 46734 (-)
Type: CAZyme
Location: 45643 - 46734 (-)
Gene ID: k141_103344_43
Type: pfam
Location: 46802 - 50266 (-)
Type: pfam
Location: 46802 - 50266 (-)
Gene ID: k141_103344_44
Type: TC
Location: 50328 - 51743 (-)
Type: TC
Location: 50328 - 51743 (-)
Gene ID: k141_103344_45
Type:
Location: 52143 - 53075 (+)
Type:
Location: 52143 - 53075 (+)
Gene ID: k141_103344_46
Type: TC
Location: 53237 - 54631 (+)
Type: TC
Location: 53237 - 54631 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Oxalobacter
Species
Oxalobacter formigenes_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.