Cluster: CGMR009477_CGC3
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate:
- Genome ID: CGMR009477
- CGC Family ID: CGCFAM_00011
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_136383 | k141_136383_17 | 15973 | 17385 | + | GT2 |
| CAZyme | k141_136383 | k141_136383_18 | 17465 | 18502 | + | GT2 |
| NULL(UNKNOWN) | k141_136383 | k141_136383_19 | 18748 | 19074 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | k141_136383 | k141_136383_20 | 19079 | 19345 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_136383 | k141_136383_21 | 19445 | 20950 | + | GT4 |
| CAZyme | k141_136383 | k141_136383_22 | 21352 | 22395 | + | GT2 |
| pfam | k141_136383 | k141_136383_23 | 22428 | 23957 | + | DUF2142 |
| TC | k141_136383 | k141_136383_24 | 24027 | 24812 | + | 3.A.1.103.4 |
| TC | k141_136383 | k141_136383_25 | 24821 | 26572 | + | 3.A.1.103.1 |
| pfam | k141_136383 | k141_136383_26 | 26575 | 27636 | + | Glyphos_transf |
| CAZyme | k141_136383 | k141_136383_27 | 27646 | 28617 | + | GT2 |
| CAZyme | k141_136383 | k141_136383_28 | 28587 | 29570 | + | GT2 |
| CAZyme | k141_136383 | k141_136383_29 | 29577 | 30431 | + | GT2 |
| TC | k141_136383 | k141_136383_30 | 30473 | 31876 | + | 9.B.18.1.1 |
Gene ID: k141_136383_17
Type: CAZyme
Location: 15973 - 17385 (+)
Type: CAZyme
Location: 15973 - 17385 (+)
Gene ID: k141_136383_18
Type: CAZyme
Location: 17465 - 18502 (+)
Type: CAZyme
Location: 17465 - 18502 (+)
Gene ID: k141_136383_19
Type:
Location: 18748 - 19074 (+)
Type:
Location: 18748 - 19074 (+)
Gene ID: k141_136383_20
Type:
Location: 19079 - 19345 (+)
Type:
Location: 19079 - 19345 (+)
Gene ID: k141_136383_21
Type: CAZyme
Location: 19445 - 20950 (+)
Type: CAZyme
Location: 19445 - 20950 (+)
Gene ID: k141_136383_22
Type: CAZyme
Location: 21352 - 22395 (+)
Type: CAZyme
Location: 21352 - 22395 (+)
Gene ID: k141_136383_23
Type: pfam
Location: 22428 - 23957 (+)
Type: pfam
Location: 22428 - 23957 (+)
Gene ID: k141_136383_24
Type: TC
Location: 24027 - 24812 (+)
Type: TC
Location: 24027 - 24812 (+)
Gene ID: k141_136383_25
Type: TC
Location: 24821 - 26572 (+)
Type: TC
Location: 24821 - 26572 (+)
Gene ID: k141_136383_26
Type: pfam
Location: 26575 - 27636 (+)
Type: pfam
Location: 26575 - 27636 (+)
Gene ID: k141_136383_27
Type: CAZyme
Location: 27646 - 28617 (+)
Type: CAZyme
Location: 27646 - 28617 (+)
Gene ID: k141_136383_28
Type: CAZyme
Location: 28587 - 29570 (+)
Type: CAZyme
Location: 28587 - 29570 (+)
Gene ID: k141_136383_29
Type: CAZyme
Location: 29577 - 30431 (+)
Type: CAZyme
Location: 29577 - 30431 (+)
Gene ID: k141_136383_30
Type: TC
Location: 30473 - 31876 (+)
Type: TC
Location: 30473 - 31876 (+)
Taxonomic Lineage
Domain
Archaea
Phylum
Methanobacteriota
Class
Methanobacteria
Order
Methanobacteriales
Family
Methanobacteriaceae
Genus
Methanobrevibacter_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.