Cluster: CGMR008527_CGC22
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR008527
- CGC Family ID: CGCFAM_05365
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_68339 | k141_68339_36 | 41213 | 43030 | - | GH43_28 |
| CAZyme | k141_68339 | k141_68339_37 | 43027 | 45465 | - | GH3 |
| CAZyme | k141_68339 | k141_68339_38 | 45443 | 47992 | - | GH78 |
| TC | k141_68339 | k141_68339_39 | 48006 | 48920 | - | 3.A.1.1.9 |
| TC | k141_68339 | k141_68339_40 | 48934 | 49881 | - | 3.A.1.1.10 |
| CAZyme | k141_68339 | k141_68339_41 | 49965 | 52277 | - | GH94 |
| CAZyme | k141_68339 | k141_68339_42 | 52291 | 54738 | - | GH148 |
| NULL(UNKNOWN) | k141_68339 | k141_68339_43 | 54826 | 56730 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | k141_68339 | k141_68339_44 | 56914 | 58098 | + | HTH_AraC | HTH_AraC |
| CAZyme | k141_68339 | k141_68339_45 | 58119 | 59759 | - | GH35 |
| TF | k141_68339 | k141_68339_46 | 59921 | 60952 | + | HTH_AraC | HTH_AraC |
| TC | k141_68339 | k141_68339_47 | 60955 | 62433 | - | 2.A.2.2.1 |
Gene ID: k141_68339_36
Type: CAZyme
Location: 41213 - 43030 (-)
Type: CAZyme
Location: 41213 - 43030 (-)
Gene ID: k141_68339_37
Type: CAZyme
Location: 43027 - 45465 (-)
Type: CAZyme
Location: 43027 - 45465 (-)
Gene ID: k141_68339_38
Type: CAZyme
Location: 45443 - 47992 (-)
Type: CAZyme
Location: 45443 - 47992 (-)
Gene ID: k141_68339_39
Type: TC
Location: 48006 - 48920 (-)
Type: TC
Location: 48006 - 48920 (-)
Gene ID: k141_68339_40
Type: TC
Location: 48934 - 49881 (-)
Type: TC
Location: 48934 - 49881 (-)
Gene ID: k141_68339_41
Type: CAZyme
Location: 49965 - 52277 (-)
Type: CAZyme
Location: 49965 - 52277 (-)
Gene ID: k141_68339_42
Type: CAZyme
Location: 52291 - 54738 (-)
Type: CAZyme
Location: 52291 - 54738 (-)
Gene ID: k141_68339_43
Type:
Location: 54826 - 56730 (-)
Type:
Location: 54826 - 56730 (-)
Gene ID: k141_68339_44
Type: TF
Location: 56914 - 58098 (+)
Type: TF
Location: 56914 - 58098 (+)
Gene ID: k141_68339_45
Type: CAZyme
Location: 58119 - 59759 (-)
Type: CAZyme
Location: 58119 - 59759 (-)
Gene ID: k141_68339_46
Type: TF
Location: 59921 - 60952 (+)
Type: TF
Location: 59921 - 60952 (+)
Gene ID: k141_68339_47
Type: TC
Location: 60955 - 62433 (-)
Type: TC
Location: 60955 - 62433 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Pararoseburia
Species
Pararoseburia lenta
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.