Cluster: CGMR006984_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR006984
- CGC Family ID: CGCFAM_02159
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_117623 | k141_117623_70 | 83714 | 84202 | + | 4.A.6.1.9 |
| TC | k141_117623 | k141_117623_71 | 84275 | 85132 | + | 4.A.6.1.1 |
| TC | k141_117623 | k141_117623_72 | 85132 | 85959 | + | 4.A.6.1.6 |
| NULL(UNKNOWN) | k141_117623 | k141_117623_73 | 86156 | 86482 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | k141_117623 | k141_117623_74 | 86587 | 87027 | + | MarR |
| CAZyme | k141_117623 | k141_117623_75 | 87542 | 93955 | + | GH31_18 |
Gene ID: k141_117623_70
Type: TC
Location: 83714 - 84202 (+)
Type: TC
Location: 83714 - 84202 (+)
Gene ID: k141_117623_71
Type: TC
Location: 84275 - 85132 (+)
Type: TC
Location: 84275 - 85132 (+)
Gene ID: k141_117623_72
Type: TC
Location: 85132 - 85959 (+)
Type: TC
Location: 85132 - 85959 (+)
Gene ID: k141_117623_73
Type:
Location: 86156 - 86482 (+)
Type:
Location: 86156 - 86482 (+)
Gene ID: k141_117623_74
Type: TF
Location: 86587 - 87027 (+)
Type: TF
Location: 86587 - 87027 (+)
Gene ID: k141_117623_75
Type: CAZyme
Location: 87542 - 93955 (+)
Type: CAZyme
Location: 87542 - 93955 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958445895
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_117623_75 | vegetarian > omnivore | 1.36003 | 0.04639 |
| k141_117623_75 | vegetarian > vegan | 2.10170 | 0.01195 |