Cluster: CGMR006984_CGC18
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR006984
- CGC Family ID: CGCFAM_01259
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_134660 | k141_134660_3 | 237 | 1463 | - | 2.A.66.2.10 |
| NULL(UNKNOWN) | k141_134660 | k141_134660_4 | 1456 | 2712 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_134660 | k141_134660_5 | 2709 | 3755 | - | GT2 |
| NULL(UNKNOWN) | k141_134660 | k141_134660_6 | 3936 | 4202 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_134660 | k141_134660_7 | 4207 | 5307 | - | Epimerase_2 |
| CAZyme | k141_134660 | k141_134660_8 | 5300 | 6106 | - | GT26 |
| TC | k141_134660 | k141_134660_9 | 6093 | 6842 | - | 9.B.18.1.2 |
Gene ID: k141_134660_3
Type: TC
Location: 237 - 1463 (-)
Type: TC
Location: 237 - 1463 (-)
Gene ID: k141_134660_4
Type:
Location: 1456 - 2712 (-)
Type:
Location: 1456 - 2712 (-)
Gene ID: k141_134660_5
Type: CAZyme
Location: 2709 - 3755 (-)
Type: CAZyme
Location: 2709 - 3755 (-)
Gene ID: k141_134660_6
Type:
Location: 3936 - 4202 (-)
Type:
Location: 3936 - 4202 (-)
Gene ID: k141_134660_7
Type: pfam
Location: 4207 - 5307 (-)
Type: pfam
Location: 4207 - 5307 (-)
Gene ID: k141_134660_8
Type: CAZyme
Location: 5300 - 6106 (-)
Type: CAZyme
Location: 5300 - 6106 (-)
Gene ID: k141_134660_9
Type: TC
Location: 6093 - 6842 (-)
Type: TC
Location: 6093 - 6842 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958445895
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_134660_9 | vegan > omnivore | 1.03212 | 0.00566 |