Cluster: CGMR006984_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR006984
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_45568 | k141_45568_83 | 93206 | 94660 | - | GH1 |
| TC | k141_45568 | k141_45568_84 | 94662 | 96011 | - | 4.A.3.2.6 |
| TC | k141_45568 | k141_45568_85 | 96021 | 96314 | - | 4.A.3.2.6 |
| TC | k141_45568 | k141_45568_86 | 96361 | 96687 | - | 4.A.3.2.7 |
Gene ID: k141_45568_83
Type: CAZyme
Location: 93206 - 94660 (-)
Type: CAZyme
Location: 93206 - 94660 (-)
Gene ID: k141_45568_84
Type: TC
Location: 94662 - 96011 (-)
Type: TC
Location: 94662 - 96011 (-)
Gene ID: k141_45568_85
Type: TC
Location: 96021 - 96314 (-)
Type: TC
Location: 96021 - 96314 (-)
Gene ID: k141_45568_86
Type: TC
Location: 96361 - 96687 (-)
Type: TC
Location: 96361 - 96687 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958445895
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_45568_83 | vegetarian > vegan | 2.23518 | 0.01976 |
| k141_45568_84 | vegetarian > vegan | 1.92810 | 0.01976 |
| k141_45568_85 | vegetarian > vegan | 2.19516 | 0.01976 |
| k141_45568_86 | vegetarian > vegan | 1.46553 | 0.02616 |