Cluster: CGMR006697_CGC66
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate:
- Genome ID: CGMR006697
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_4670 | k141_4670_6 | 4021 | 5733 | - | 1.B.52.2.2 |
| CAZyme | k141_4670 | k141_4670_7 | 5809 | 8511 | - | GH94 |
| TF | k141_4670 | k141_4670_8 | 8532 | 9548 | - | LacI |
| CAZyme | k141_4670 | k141_4670_9 | 9632 | 10975 | - | GH30_1 |
| CAZyme | k141_4670 | k141_4670_10 | 10991 | 14131 | - | GH161 |
| TC | k141_4670 | k141_4670_11 | 14210 | 15037 | - | 3.A.1.1.34 |
| TC | k141_4670 | k141_4670_12 | 15037 | 15996 | - | 3.A.1.1.11 |
| STP | k141_4670 | k141_4670_13 | 16069 | 17406 | - | SBP_bac_1 |
| CAZyme | k141_4670 | k141_4670_14 | 17841 | 19271 | - | GH1 |
| NULL(UNKNOWN) | k141_4670 | k141_4670_15 | 19485 | 19649 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_4670 | k141_4670_16 | 20229 | 25205 | - | CBM32 | CBM32 | CBM32 | CBM32 | GH81 |
| CAZyme | k141_4670 | k141_4670_17 | 25423 | 27690 | - | GH128 |
| CAZyme | k141_4670 | k141_4670_18 | 27763 | 31806 | - | CBM32 | CBM32 | GH55_1 |
| TC | k141_4670 | k141_4670_19 | 32054 | 33373 | - | 4.A.3.2.2 |
| TC | k141_4670 | k141_4670_20 | 33506 | 33811 | - | 4.A.3.2.9 |
| TC | k141_4670 | k141_4670_21 | 33888 | 34199 | - | 4.A.3.2.1 |
Gene ID: k141_4670_6
Type: TC
Location: 4021 - 5733 (-)
Type: TC
Location: 4021 - 5733 (-)
Gene ID: k141_4670_7
Type: CAZyme
Location: 5809 - 8511 (-)
Type: CAZyme
Location: 5809 - 8511 (-)
Gene ID: k141_4670_8
Type: TF
Location: 8532 - 9548 (-)
Type: TF
Location: 8532 - 9548 (-)
Gene ID: k141_4670_9
Type: CAZyme
Location: 9632 - 10975 (-)
Type: CAZyme
Location: 9632 - 10975 (-)
Gene ID: k141_4670_10
Type: CAZyme
Location: 10991 - 14131 (-)
Type: CAZyme
Location: 10991 - 14131 (-)
Gene ID: k141_4670_11
Type: TC
Location: 14210 - 15037 (-)
Type: TC
Location: 14210 - 15037 (-)
Gene ID: k141_4670_12
Type: TC
Location: 15037 - 15996 (-)
Type: TC
Location: 15037 - 15996 (-)
Gene ID: k141_4670_13
Type: STP
Location: 16069 - 17406 (-)
Type: STP
Location: 16069 - 17406 (-)
Gene ID: k141_4670_14
Type: CAZyme
Location: 17841 - 19271 (-)
Type: CAZyme
Location: 17841 - 19271 (-)
Gene ID: k141_4670_15
Type:
Location: 19485 - 19649 (-)
Type:
Location: 19485 - 19649 (-)
Gene ID: k141_4670_16
Type: CAZyme
Location: 20229 - 25205 (-)
Type: CAZyme
Location: 20229 - 25205 (-)
Gene ID: k141_4670_17
Type: CAZyme
Location: 25423 - 27690 (-)
Type: CAZyme
Location: 25423 - 27690 (-)
Gene ID: k141_4670_18
Type: CAZyme
Location: 27763 - 31806 (-)
Type: CAZyme
Location: 27763 - 31806 (-)
Gene ID: k141_4670_19
Type: TC
Location: 32054 - 33373 (-)
Type: TC
Location: 32054 - 33373 (-)
Gene ID: k141_4670_20
Type: TC
Location: 33506 - 33811 (-)
Type: TC
Location: 33506 - 33811 (-)
Gene ID: k141_4670_21
Type: TC
Location: 33888 - 34199 (-)
Type: TC
Location: 33888 - 34199 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium neonatale
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.