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Cluster: CGMR005887_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_112038 k141_112038_5 4345 5271 - GT2
pfam k141_112038 k141_112038_6 5393 6688 - LytR_cpsA_psr
TC k141_112038 k141_112038_7 6824 8233 - 9.B.18.1.1
CAZyme k141_112038 k141_112038_8 8309 9289 - GT2
CAZyme k141_112038 k141_112038_9 9310 10689 - GT2
pfam k141_112038 k141_112038_10 10766 12487 - PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
CAZyme k141_112038 k141_112038_11 12529 14502 - GT2 | GT2
CAZyme k141_112038 k141_112038_12 14514 16790 - GT2
pfam k141_112038 k141_112038_13 16790 18901 - PCMT | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25
TC k141_112038 k141_112038_14 18906 20210 - 3.A.1.103.6
TC k141_112038 k141_112038_15 20256 21287 - 3.A.1.104.1
Gene ID: k141_112038_5
Type: CAZyme
Location: 4345 - 5271 (-)
Gene ID: k141_112038_6
Type: pfam
Location: 5393 - 6688 (-)
Gene ID: k141_112038_7
Type: TC
Location: 6824 - 8233 (-)
Gene ID: k141_112038_8
Type: CAZyme
Location: 8309 - 9289 (-)
Gene ID: k141_112038_9
Type: CAZyme
Location: 9310 - 10689 (-)
Gene ID: k141_112038_10
Type: pfam
Location: 10766 - 12487 (-)
Gene ID: k141_112038_11
Type: CAZyme
Location: 12529 - 14502 (-)
Gene ID: k141_112038_12
Type: CAZyme
Location: 14514 - 16790 (-)
Gene ID: k141_112038_13
Type: pfam
Location: 16790 - 18901 (-)
Gene ID: k141_112038_14
Type: TC
Location: 18906 - 20210 (-)
Gene ID: k141_112038_15
Type: TC
Location: 20256 - 21287 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_112038_15 vegetarian > omnivore 1.09036 0.01389

🧭 Explore Read Mapping of CGC

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