Cluster: CGMR005887_CGC4
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR005887
- CGC Family ID: CGCFAM_08163
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_204670 | k141_204670_4 | 2217 | 2846 | - | 2.A.115.2.14 |
| TC | k141_204670 | k141_204670_5 | 2864 | 3574 | - | 3.A.1.4.10 |
| TC | k141_204670 | k141_204670_6 | 3587 | 4348 | - | 3.A.1.4.10 |
| TC | k141_204670 | k141_204670_7 | 4350 | 5411 | - | 3.A.1.4.8 |
| TC | k141_204670 | k141_204670_8 | 5425 | 6309 | - | 3.A.1.4.10 |
| TC | k141_204670 | k141_204670_9 | 6496 | 7671 | - | 3.A.1.4.10 |
| CAZyme | k141_204670 | k141_204670_10 | 8010 | 9950 | - | GH42 |
| pfam | k141_204670 | k141_204670_11 | 9951 | 10898 | - | BPD_transp_2 |
| STP | k141_204670 | k141_204670_12 | 10913 | 12121 | - | Peripla_BP_1 |
| TC | k141_204670 | k141_204670_13 | 12147 | 13076 | - | 3.A.1.2.3 |
| TC | k141_204670 | k141_204670_14 | 13091 | 14593 | - | 3.A.1.2.20 |
| TF | k141_204670 | k141_204670_15 | 14765 | 16285 | + | HTH_AraC | HTH_AraC |
| TC | k141_204670 | k141_204670_16 | 16285 | 18051 | + | 8.A.59.2.1 |
| CAZyme | k141_204670 | k141_204670_17 | 18042 | 20144 | - | GH36 |
| pfam | k141_204670 | k141_204670_18 | 20131 | 21069 | - | EamA | EamA |
| pfam | k141_204670 | k141_204670_19 | 21291 | 22058 | + | DUF975 |
| TC | k141_204670 | k141_204670_20 | 22087 | 23298 | - | 2.A.86.1.8 |
Gene ID: k141_204670_4
Type: TC
Location: 2217 - 2846 (-)
Type: TC
Location: 2217 - 2846 (-)
Gene ID: k141_204670_5
Type: TC
Location: 2864 - 3574 (-)
Type: TC
Location: 2864 - 3574 (-)
Gene ID: k141_204670_6
Type: TC
Location: 3587 - 4348 (-)
Type: TC
Location: 3587 - 4348 (-)
Gene ID: k141_204670_7
Type: TC
Location: 4350 - 5411 (-)
Type: TC
Location: 4350 - 5411 (-)
Gene ID: k141_204670_8
Type: TC
Location: 5425 - 6309 (-)
Type: TC
Location: 5425 - 6309 (-)
Gene ID: k141_204670_9
Type: TC
Location: 6496 - 7671 (-)
Type: TC
Location: 6496 - 7671 (-)
Gene ID: k141_204670_10
Type: CAZyme
Location: 8010 - 9950 (-)
Type: CAZyme
Location: 8010 - 9950 (-)
Gene ID: k141_204670_11
Type: pfam
Location: 9951 - 10898 (-)
Type: pfam
Location: 9951 - 10898 (-)
Gene ID: k141_204670_12
Type: STP
Location: 10913 - 12121 (-)
Type: STP
Location: 10913 - 12121 (-)
Gene ID: k141_204670_13
Type: TC
Location: 12147 - 13076 (-)
Type: TC
Location: 12147 - 13076 (-)
Gene ID: k141_204670_14
Type: TC
Location: 13091 - 14593 (-)
Type: TC
Location: 13091 - 14593 (-)
Gene ID: k141_204670_15
Type: TF
Location: 14765 - 16285 (+)
Type: TF
Location: 14765 - 16285 (+)
Gene ID: k141_204670_16
Type: TC
Location: 16285 - 18051 (+)
Type: TC
Location: 16285 - 18051 (+)
Gene ID: k141_204670_17
Type: CAZyme
Location: 18042 - 20144 (-)
Type: CAZyme
Location: 18042 - 20144 (-)
Gene ID: k141_204670_18
Type: pfam
Location: 20131 - 21069 (-)
Type: pfam
Location: 20131 - 21069 (-)
Gene ID: k141_204670_19
Type: pfam
Location: 21291 - 22058 (+)
Type: pfam
Location: 21291 - 22058 (+)
Gene ID: k141_204670_20
Type: TC
Location: 22087 - 23298 (-)
Type: TC
Location: 22087 - 23298 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens aceti
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.