Cluster: CGMR005887_CGC19
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR005887
- CGC Family ID: CGCFAM_02494
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_94931 | k141_94931_31 | 35353 | 35730 | + | 1.E.14.1.15 |
| TC | k141_94931 | k141_94931_32 | 35727 | 36419 | + | 2.A.122.1.4 |
| TC | k141_94931 | k141_94931_33 | 36412 | 38253 | - | 1.B.52.2.2 |
| TC | k141_94931 | k141_94931_34 | 38289 | 39479 | - | 3.A.1.2.5 |
| TC | k141_94931 | k141_94931_35 | 39476 | 41020 | - | 3.A.1.2.5 |
| TC | k141_94931 | k141_94931_36 | 41195 | 42355 | - | 3.A.1.2.5 |
| TC | k141_94931 | k141_94931_37 | 42563 | 43612 | - | 3.A.1.2.26 |
| TF | k141_94931 | k141_94931_38 | 43609 | 45213 | - | HTH_AraC | HTH_AraC |
| TC | k141_94931 | k141_94931_39 | 45191 | 46708 | - | 8.A.59.2.1 |
| pfam | k141_94931 | k141_94931_40 | 46692 | 47744 | - | Peripla_BP_4 |
| CAZyme | k141_94931 | k141_94931_41 | 48025 | 48822 | - | CE4 |
| NULL(UNKNOWN) | k141_94931 | k141_94931_42 | 48988 | 49077 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_94931 | k141_94931_43 | 49225 | 51102 | + | GH2 |
Gene ID: k141_94931_31
Type: TC
Location: 35353 - 35730 (+)
Type: TC
Location: 35353 - 35730 (+)
Gene ID: k141_94931_32
Type: TC
Location: 35727 - 36419 (+)
Type: TC
Location: 35727 - 36419 (+)
Gene ID: k141_94931_33
Type: TC
Location: 36412 - 38253 (-)
Type: TC
Location: 36412 - 38253 (-)
Gene ID: k141_94931_34
Type: TC
Location: 38289 - 39479 (-)
Type: TC
Location: 38289 - 39479 (-)
Gene ID: k141_94931_35
Type: TC
Location: 39476 - 41020 (-)
Type: TC
Location: 39476 - 41020 (-)
Gene ID: k141_94931_36
Type: TC
Location: 41195 - 42355 (-)
Type: TC
Location: 41195 - 42355 (-)
Gene ID: k141_94931_37
Type: TC
Location: 42563 - 43612 (-)
Type: TC
Location: 42563 - 43612 (-)
Gene ID: k141_94931_38
Type: TF
Location: 43609 - 45213 (-)
Type: TF
Location: 43609 - 45213 (-)
Gene ID: k141_94931_39
Type: TC
Location: 45191 - 46708 (-)
Type: TC
Location: 45191 - 46708 (-)
Gene ID: k141_94931_40
Type: pfam
Location: 46692 - 47744 (-)
Type: pfam
Location: 46692 - 47744 (-)
Gene ID: k141_94931_41
Type: CAZyme
Location: 48025 - 48822 (-)
Type: CAZyme
Location: 48025 - 48822 (-)
Gene ID: k141_94931_42
Type:
Location: 48988 - 49077 (+)
Type:
Location: 48988 - 49077 (+)
Gene ID: k141_94931_43
Type: CAZyme
Location: 49225 - 51102 (+)
Type: CAZyme
Location: 49225 - 51102 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Suilimivivens
Species
Suilimivivens aceti
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_94931_31 | vegetarian > omnivore | 1.18931 | 0.01389 |
| k141_94931_31 | vegetarian > vegan | 1.90719 | 0.00341 |
| k141_94931_42 | vegetarian > omnivore | 1.46846 | 0.01389 |
| k141_94931_42 | vegetarian > vegan | 1.32858 | 0.00341 |