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Cluster: CGMR002452_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_160587 k141_160587_145 143338 144285 + GH20
TF k141_160587 k141_160587_146 144307 145182 + HTH_AraC
CAZyme k141_160587 k141_160587_147 145191 146234 - GH29
STP k141_160587 k141_160587_148 146436 146999 - Sigma70_r2 | Sigma70_r4_2
STP k141_160587 k141_160587_149 147899 148810 + FecR
TC k141_160587 k141_160587_150 149058 152351 + 1.B.14.6.13
TC k141_160587 k141_160587_151 152364 153989 + 8.A.46.2.2
CAZyme k141_160587 k141_160587_152 154017 154961 + GH18
Gene ID: k141_160587_145
Type: CAZyme
Location: 143338 - 144285 (+)
Gene ID: k141_160587_146
Type: TF
Location: 144307 - 145182 (+)
Gene ID: k141_160587_147
Type: CAZyme
Location: 145191 - 146234 (-)
Gene ID: k141_160587_148
Type: STP
Location: 146436 - 146999 (-)
Gene ID: k141_160587_149
Type: STP
Location: 147899 - 148810 (+)
Gene ID: k141_160587_150
Type: TC
Location: 149058 - 152351 (+)
Gene ID: k141_160587_151
Type: TC
Location: 152364 - 153989 (+)
Gene ID: k141_160587_152
Type: CAZyme
Location: 154017 - 154961 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_160587_149 vegan > omnivore 1.15479 0.02236

🧭 Explore Read Mapping of CGC

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