Cluster: CGMR002392_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR002392
- CGC Family ID: CGCFAM_03691
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_39881 | k141_39881_33 | 49421 | 50140 | - | 9.B.143.2.3 |
| pfam | k141_39881 | k141_39881_34 | 50394 | 52535 | + | Radical_SAM_N | DUF3362 |
| TC | k141_39881 | k141_39881_35 | 52662 | 54032 | - | 4.A.1.2.11 |
| CAZyme | k141_39881 | k141_39881_36 | 54044 | 55522 | - | GH1 |
Gene ID: k141_39881_33
Type: TC
Location: 49421 - 50140 (-)
Type: TC
Location: 49421 - 50140 (-)
Gene ID: k141_39881_34
Type: pfam
Location: 50394 - 52535 (+)
Type: pfam
Location: 50394 - 52535 (+)
Gene ID: k141_39881_35
Type: TC
Location: 52662 - 54032 (-)
Type: TC
Location: 52662 - 54032 (-)
Gene ID: k141_39881_36
Type: CAZyme
Location: 54044 - 55522 (-)
Type: CAZyme
Location: 54044 - 55522 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AW
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_39881_35 | vegan > omnivore | 1.33473 | 0.02258 |
| k141_39881_36 | vegan > omnivore | 1.32942 | 0.02258 |