Cluster: CGMR002392_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR002392
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_63888 | k141_63888_11 | 10342 | 11094 | - | 3.A.1.3.20 |
| TC | k141_63888 | k141_63888_12 | 11107 | 12468 | - | 3.A.1.3.16 |
| TC | k141_63888 | k141_63888_13 | 12587 | 13447 | - | 3.A.1.3.15 |
| pfam | k141_63888 | k141_63888_14 | 13595 | 14461 | - | AP_endonuc_2 |
| CAZyme | k141_63888 | k141_63888_15 | 14628 | 15647 | - | GH109 |
Gene ID: k141_63888_11
Type: TC
Location: 10342 - 11094 (-)
Type: TC
Location: 10342 - 11094 (-)
Gene ID: k141_63888_12
Type: TC
Location: 11107 - 12468 (-)
Type: TC
Location: 11107 - 12468 (-)
Gene ID: k141_63888_13
Type: TC
Location: 12587 - 13447 (-)
Type: TC
Location: 12587 - 13447 (-)
Gene ID: k141_63888_14
Type: pfam
Location: 13595 - 14461 (-)
Type: pfam
Location: 13595 - 14461 (-)
Gene ID: k141_63888_15
Type: CAZyme
Location: 14628 - 15647 (-)
Type: CAZyme
Location: 14628 - 15647 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AW
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.