Cluster: CGMR002392_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR002392
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_96219 | k141_96219_20 | 23733 | 24659 | - | CE7 |
| TC | k141_96219 | k141_96219_21 | 24791 | 25618 | - | 3.A.1.5.27 |
| TC | k141_96219 | k141_96219_22 | 25619 | 27634 | - | 3.A.1.5.25 |
| TC | k141_96219 | k141_96219_23 | 27638 | 28594 | - | 3.A.1.5.38 |
| TC | k141_96219 | k141_96219_24 | 28752 | 30365 | - | 3.A.1.5.27 |
| pfam | k141_96219 | k141_96219_25 | 30730 | 32670 | - | GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH |
| TC | k141_96219 | k141_96219_26 | 32677 | 34359 | - | 2.A.66.4.4 |
Gene ID: k141_96219_20
Type: CAZyme
Location: 23733 - 24659 (-)
Type: CAZyme
Location: 23733 - 24659 (-)
Gene ID: k141_96219_21
Type: TC
Location: 24791 - 25618 (-)
Type: TC
Location: 24791 - 25618 (-)
Gene ID: k141_96219_22
Type: TC
Location: 25619 - 27634 (-)
Type: TC
Location: 25619 - 27634 (-)
Gene ID: k141_96219_23
Type: TC
Location: 27638 - 28594 (-)
Type: TC
Location: 27638 - 28594 (-)
Gene ID: k141_96219_24
Type: TC
Location: 28752 - 30365 (-)
Type: TC
Location: 28752 - 30365 (-)
Gene ID: k141_96219_25
Type: pfam
Location: 30730 - 32670 (-)
Type: pfam
Location: 30730 - 32670 (-)
Gene ID: k141_96219_26
Type: TC
Location: 32677 - 34359 (-)
Type: TC
Location: 32677 - 34359 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AW
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.