Cluster: CGMR002392_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR002392
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_116684 | k141_116684_6 | 7004 | 8386 | - | GH4 |
| TC | k141_116684 | k141_116684_7 | 8390 | 10006 | - | 4.A.1.1.3 |
| pfam | k141_116684 | k141_116684_8 | 10106 | 10972 | - | PRD | PRD | CAT_RBD |
| TC | k141_116684 | k141_116684_9 | 10979 | 11491 | - | 4.A.1.2.5 |
| STP | k141_116684 | k141_116684_10 | 11835 | 12596 | - | Fer4 |
| TC | k141_116684 | k141_116684_11 | 13217 | 15460 | - | 1.I.1.1.3 |
Gene ID: k141_116684_6
Type: CAZyme
Location: 7004 - 8386 (-)
Type: CAZyme
Location: 7004 - 8386 (-)
Gene ID: k141_116684_7
Type: TC
Location: 8390 - 10006 (-)
Type: TC
Location: 8390 - 10006 (-)
Gene ID: k141_116684_8
Type: pfam
Location: 10106 - 10972 (-)
Type: pfam
Location: 10106 - 10972 (-)
Gene ID: k141_116684_9
Type: TC
Location: 10979 - 11491 (-)
Type: TC
Location: 10979 - 11491 (-)
Gene ID: k141_116684_10
Type: STP
Location: 11835 - 12596 (-)
Type: STP
Location: 11835 - 12596 (-)
Gene ID: k141_116684_11
Type: TC
Location: 13217 - 15460 (-)
Type: TC
Location: 13217 - 15460 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AW
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.