Cluster: C77.CMAG_2_CGC4
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 4
- Substrate:
- Genome ID: C77.CMAG_2
- CGC Family ID: CGCFAM_00456
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C77_contig_975 | C77_contig_975_574 | 579085 | 580107 | - | 9.B.18.2.1 |
| CAZyme | C77_contig_975 | C77_contig_975_575 | 580109 | 581323 | - | GT4 |
| CAZyme | C77_contig_975 | C77_contig_975_576 | 581339 | 582088 | - | GT2 |
| pfam | C77_contig_975 | C77_contig_975_577 | 582095 | 582949 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 |
| TC | C77_contig_975 | C77_contig_975_578 | 582952 | 583566 | - | 9.B.18.1.3 |
| TC | C77_contig_975 | C77_contig_975_579 | 583571 | 585445 | - | 9.B.18.2.1 |
| pfam | C77_contig_975 | C77_contig_975_580 | 585411 | 586175 | - | CpsB_CapC |
| TC | C77_contig_975 | C77_contig_975_581 | 586194 | 586907 | - | 8.A.3.2.3 |
| TC | C77_contig_975 | C77_contig_975_582 | 586928 | 587773 | - | 8.A.3.2.4 |
| CAZyme | C77_contig_975 | C77_contig_975_583 | 587902 | 591432 | - | GT4 |
| pfam | C77_contig_975 | C77_contig_975_584 | 591435 | 592604 | - | Glyphos_transf |
| TC | C77_contig_975 | C77_contig_975_585 | 592617 | 593432 | - | 3.A.1.104.1 |
| CAZyme | C77_contig_975 | C77_contig_975_586 | 593446 | 594186 | - | GT26 |
| pfam | C77_contig_975 | C77_contig_975_587 | 594183 | 595316 | - | Glyphos_transf |
| TC | C77_contig_975 | C77_contig_975_588 | 595297 | 596361 | - | 3.A.1.104.1 |
Gene ID: C77_contig_975_574
Type: TC
Location: 579085 - 580107 (-)
Type: TC
Location: 579085 - 580107 (-)
Gene ID: C77_contig_975_575
Type: CAZyme
Location: 580109 - 581323 (-)
Type: CAZyme
Location: 580109 - 581323 (-)
Gene ID: C77_contig_975_576
Type: CAZyme
Location: 581339 - 582088 (-)
Type: CAZyme
Location: 581339 - 582088 (-)
Gene ID: C77_contig_975_577
Type: pfam
Location: 582095 - 582949 (-)
Type: pfam
Location: 582095 - 582949 (-)
Gene ID: C77_contig_975_578
Type: TC
Location: 582952 - 583566 (-)
Type: TC
Location: 582952 - 583566 (-)
Gene ID: C77_contig_975_579
Type: TC
Location: 583571 - 585445 (-)
Type: TC
Location: 583571 - 585445 (-)
Gene ID: C77_contig_975_580
Type: pfam
Location: 585411 - 586175 (-)
Type: pfam
Location: 585411 - 586175 (-)
Gene ID: C77_contig_975_581
Type: TC
Location: 586194 - 586907 (-)
Type: TC
Location: 586194 - 586907 (-)
Gene ID: C77_contig_975_582
Type: TC
Location: 586928 - 587773 (-)
Type: TC
Location: 586928 - 587773 (-)
Gene ID: C77_contig_975_583
Type: CAZyme
Location: 587902 - 591432 (-)
Type: CAZyme
Location: 587902 - 591432 (-)
Gene ID: C77_contig_975_584
Type: pfam
Location: 591435 - 592604 (-)
Type: pfam
Location: 591435 - 592604 (-)
Gene ID: C77_contig_975_585
Type: TC
Location: 592617 - 593432 (-)
Type: TC
Location: 592617 - 593432 (-)
Gene ID: C77_contig_975_586
Type: CAZyme
Location: 593446 - 594186 (-)
Type: CAZyme
Location: 593446 - 594186 (-)
Gene ID: C77_contig_975_587
Type: pfam
Location: 594183 - 595316 (-)
Type: pfam
Location: 594183 - 595316 (-)
Gene ID: C77_contig_975_588
Type: TC
Location: 595297 - 596361 (-)
Type: TC
Location: 595297 - 596361 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Vagococcaceae
Genus
Vagococcus
Species
Vagococcus sp003462485
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.