Cluster: C73.bin_12_CGC41
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: C73.bin_12
- CGC Family ID: CGCFAM_04418
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C73_contig_349 | C73_contig_349_80 | 92309 | 93208 | - | 2.A.115.1.5 |
| TF | C73_contig_349 | C73_contig_349_81 | 93559 | 94038 | + | MarR |
| TC | C73_contig_349 | C73_contig_349_82 | 94047 | 96242 | + | 3.A.1.135.6 |
| TC | C73_contig_349 | C73_contig_349_83 | 96239 | 98083 | + | 3.A.1.135.6 |
| CAZyme | C73_contig_349 | C73_contig_349_84 | 98245 | 100470 | + | GH36 |
| peptidase | C73_contig_349 | C73_contig_349_85 | 100677 | 102482 | + | M03.UPB |
| pfam | C73_contig_349 | C73_contig_349_86 | 102895 | 103755 | + | PRD | PRD | CAT_RBD |
| TC | C73_contig_349 | C73_contig_349_87 | 103742 | 104233 | + | 4.A.1.2.6 |
| TC | C73_contig_349 | C73_contig_349_88 | 104255 | 105871 | + | 8.A.7.1.1 |
| STP | C73_contig_349 | C73_contig_349_89 | 105991 | 106248 | + | PTS-HPr |
| TC | C73_contig_349 | C73_contig_349_90 | 106379 | 107845 | + | 4.A.1.1.7 |
| pfam | C73_contig_349 | C73_contig_349_91 | 108237 | 108962 | + | Glucosamine_iso |
| CAZyme | C73_contig_349 | C73_contig_349_92 | 109075 | 110214 | + | CE9 |
Gene ID: C73_contig_349_80
Type: TC
Location: 92309 - 93208 (-)
Type: TC
Location: 92309 - 93208 (-)
Gene ID: C73_contig_349_81
Type: TF
Location: 93559 - 94038 (+)
Type: TF
Location: 93559 - 94038 (+)
Gene ID: C73_contig_349_82
Type: TC
Location: 94047 - 96242 (+)
Type: TC
Location: 94047 - 96242 (+)
Gene ID: C73_contig_349_83
Type: TC
Location: 96239 - 98083 (+)
Type: TC
Location: 96239 - 98083 (+)
Gene ID: C73_contig_349_84
Type: CAZyme
Location: 98245 - 100470 (+)
Type: CAZyme
Location: 98245 - 100470 (+)
Gene ID: C73_contig_349_85
Type: peptidase
Location: 100677 - 102482 (+)
Type: peptidase
Location: 100677 - 102482 (+)
Gene ID: C73_contig_349_86
Type: pfam
Location: 102895 - 103755 (+)
Type: pfam
Location: 102895 - 103755 (+)
Gene ID: C73_contig_349_87
Type: TC
Location: 103742 - 104233 (+)
Type: TC
Location: 103742 - 104233 (+)
Gene ID: C73_contig_349_88
Type: TC
Location: 104255 - 105871 (+)
Type: TC
Location: 104255 - 105871 (+)
Gene ID: C73_contig_349_89
Type: STP
Location: 105991 - 106248 (+)
Type: STP
Location: 105991 - 106248 (+)
Gene ID: C73_contig_349_90
Type: TC
Location: 106379 - 107845 (+)
Type: TC
Location: 106379 - 107845 (+)
Gene ID: C73_contig_349_91
Type: pfam
Location: 108237 - 108962 (+)
Type: pfam
Location: 108237 - 108962 (+)
Gene ID: C73_contig_349_92
Type: CAZyme
Location: 109075 - 110214 (+)
Type: CAZyme
Location: 109075 - 110214 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Gallintestinimicrobium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.