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Cluster: C65.bin_5_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC C65_contig_188 C65_contig_188_2549 2771460 2772824 + 2.A.2.3.3
CAZyme C65_contig_188 C65_contig_188_2550 2772867 2774033 + GH5_44
CAZyme C65_contig_188 C65_contig_188_2551 2774079 2775725 + CBM91 | GH43_11
CAZyme C65_contig_188 C65_contig_188_2552 2775888 2777387 + GH77
pfam C65_contig_188 C65_contig_188_2553 2777374 2777865 + EamA | SLC35F
pfam C65_contig_188 C65_contig_188_2554 2778202 2778846 + PAS_6 | HTH_22
CAZyme C65_contig_188 C65_contig_188_2555 2778954 2780741 - CBM48 | GH13_9
Gene ID: C65_contig_188_2549
Type: TC
Location: 2771460 - 2772824 (+)
Gene ID: C65_contig_188_2550
Type: CAZyme
Location: 2772867 - 2774033 (+)
Gene ID: C65_contig_188_2551
Type: CAZyme
Location: 2774079 - 2775725 (+)
Gene ID: C65_contig_188_2552
Type: CAZyme
Location: 2775888 - 2777387 (+)
Gene ID: C65_contig_188_2553
Type: pfam
Location: 2777374 - 2777865 (+)
Gene ID: C65_contig_188_2554
Type: pfam
Location: 2778202 - 2778846 (+)
Gene ID: C65_contig_188_2555
Type: CAZyme
Location: 2778954 - 2780741 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
C65_contig_188_2550 vegan > omnivore 1.04492 0.01514
C65_contig_188_2550 vegetarian > omnivore 1.39275 0.02319
C65_contig_188_2551 vegan > omnivore 1.39870 0.01514
C65_contig_188_2551 vegetarian > omnivore 1.48393 0.02319
C65_contig_188_2553 vegan > omnivore 1.69681 0.01514
C65_contig_188_2554 vegan > omnivore 2.22907 0.01514
C65_contig_188_2554 vegetarian > omnivore 2.22836 0.02319

🧭 Explore Read Mapping of CGC

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