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Cluster: C64.bin_41_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme C64_contig_3682 C64_contig_3682_14 17748 18944 - GH29
TF C64_contig_3682 C64_contig_3682_15 19068 19958 + HTH_AraC | HTH_AraC
NULL(UNKNOWN) C64_contig_3682 C64_contig_3682_16 20062 20154 + NULL(UNKNOWN)
[View Structural Homologs]
TC C64_contig_3682 C64_contig_3682_17 20320 21312 + 3.A.1.24.1
TC C64_contig_3682 C64_contig_3682_18 21299 21970 + 3.A.1.24.5
TC C64_contig_3682 C64_contig_3682_19 21967 22860 + 3.A.1.24.2
STP C64_contig_3682 C64_contig_3682_20 23211 24140 + PALP
TC C64_contig_3682 C64_contig_3682_21 24548 25414 + 2.A.7.2.1
pfam C64_contig_3682 C64_contig_3682_22 25635 26582 + PBP_like_2 | PBP_like_2
TC C64_contig_3682 C64_contig_3682_23 26665 28500 + 3.A.1.7.5
TC C64_contig_3682 C64_contig_3682_24 28497 29276 + 3.A.1.7.5
Gene ID: C64_contig_3682_14
Type: CAZyme
Location: 17748 - 18944 (-)
Gene ID: C64_contig_3682_15
Type: TF
Location: 19068 - 19958 (+)
Gene ID: C64_contig_3682_16
Type:
Location: 20062 - 20154 (+)
Gene ID: C64_contig_3682_17
Type: TC
Location: 20320 - 21312 (+)
Gene ID: C64_contig_3682_18
Type: TC
Location: 21299 - 21970 (+)
Gene ID: C64_contig_3682_19
Type: TC
Location: 21967 - 22860 (+)
Gene ID: C64_contig_3682_20
Type: STP
Location: 23211 - 24140 (+)
Gene ID: C64_contig_3682_21
Type: TC
Location: 24548 - 25414 (+)
Gene ID: C64_contig_3682_22
Type: pfam
Location: 25635 - 26582 (+)
Gene ID: C64_contig_3682_23
Type: TC
Location: 26665 - 28500 (+)
Gene ID: C64_contig_3682_24
Type: TC
Location: 28497 - 29276 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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