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Cluster: C6.bin_3_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme C6_contig_200 C6_contig_200_195 182999 184675 - GH123
TC C6_contig_200 C6_contig_200_196 184691 185503 - 3.A.1.1.34
TC C6_contig_200 C6_contig_200_197 185521 186405 - 3.A.1.1.11
STP C6_contig_200 C6_contig_200_198 186495 187796 - SBP_bac_1
pfam C6_contig_200 C6_contig_200_199 188036 188845 - NAT_N | GNAT_C
TC C6_contig_200 C6_contig_200_200 188848 189684 - 3.A.1.1.47
TC C6_contig_200 C6_contig_200_201 189684 190550 - 3.A.1.1.17
Gene ID: C6_contig_200_195
Type: CAZyme
Location: 182999 - 184675 (-)
Gene ID: C6_contig_200_196
Type: TC
Location: 184691 - 185503 (-)
Gene ID: C6_contig_200_197
Type: TC
Location: 185521 - 186405 (-)
Gene ID: C6_contig_200_198
Type: STP
Location: 186495 - 187796 (-)
Gene ID: C6_contig_200_199
Type: pfam
Location: 188036 - 188845 (-)
Gene ID: C6_contig_200_200
Type: TC
Location: 188848 - 189684 (-)
Gene ID: C6_contig_200_201
Type: TC
Location: 189684 - 190550 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
C6_contig_200_195 vegan > omnivore 1.48653 0.02258
C6_contig_200_195 vegetarian > omnivore 1.11694 0.04130
C6_contig_200_196 vegan > omnivore 1.22505 0.02258
C6_contig_200_196 vegetarian > omnivore 1.31935 0.04130
C6_contig_200_198 vegan > omnivore 1.28433 0.02258

🧭 Explore Read Mapping of CGC

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