Cluster: C6.bin_3_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: C6.bin_3
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C6_contig_200 | C6_contig_200_195 | 182999 | 184675 | - | GH123 |
| TC | C6_contig_200 | C6_contig_200_196 | 184691 | 185503 | - | 3.A.1.1.34 |
| TC | C6_contig_200 | C6_contig_200_197 | 185521 | 186405 | - | 3.A.1.1.11 |
| STP | C6_contig_200 | C6_contig_200_198 | 186495 | 187796 | - | SBP_bac_1 |
| pfam | C6_contig_200 | C6_contig_200_199 | 188036 | 188845 | - | NAT_N | GNAT_C |
| TC | C6_contig_200 | C6_contig_200_200 | 188848 | 189684 | - | 3.A.1.1.47 |
| TC | C6_contig_200 | C6_contig_200_201 | 189684 | 190550 | - | 3.A.1.1.17 |
Gene ID: C6_contig_200_195
Type: CAZyme
Location: 182999 - 184675 (-)
Type: CAZyme
Location: 182999 - 184675 (-)
Gene ID: C6_contig_200_196
Type: TC
Location: 184691 - 185503 (-)
Type: TC
Location: 184691 - 185503 (-)
Gene ID: C6_contig_200_197
Type: TC
Location: 185521 - 186405 (-)
Type: TC
Location: 185521 - 186405 (-)
Gene ID: C6_contig_200_198
Type: STP
Location: 186495 - 187796 (-)
Type: STP
Location: 186495 - 187796 (-)
Gene ID: C6_contig_200_199
Type: pfam
Location: 188036 - 188845 (-)
Type: pfam
Location: 188036 - 188845 (-)
Gene ID: C6_contig_200_200
Type: TC
Location: 188848 - 189684 (-)
Type: TC
Location: 188848 - 189684 (-)
Gene ID: C6_contig_200_201
Type: TC
Location: 189684 - 190550 (-)
Type: TC
Location: 189684 - 190550 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Dorea
Species
Dorea formicigenerans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C6_contig_200_195 | vegan > omnivore | 1.48653 | 0.02258 |
| C6_contig_200_195 | vegetarian > omnivore | 1.11694 | 0.04130 |
| C6_contig_200_196 | vegan > omnivore | 1.22505 | 0.02258 |
| C6_contig_200_196 | vegetarian > omnivore | 1.31935 | 0.04130 |
| C6_contig_200_198 | vegan > omnivore | 1.28433 | 0.02258 |