Cluster: C6.bin_3_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: C6.bin_3
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C6_contig_195 | C6_contig_195_166 | 152780 | 153613 | - | 3.A.1.1.41 |
| TC | C6_contig_195 | C6_contig_195_167 | 153615 | 154490 | - | 3.A.1.1.25 |
| STP | C6_contig_195 | C6_contig_195_168 | 154586 | 155875 | - | SBP_bac_1 |
| pfam | C6_contig_195 | C6_contig_195_169 | 156181 | 156768 | - | TetR_C_8 |
| TC | C6_contig_195 | C6_contig_195_170 | 156982 | 159516 | + | 9.B.74.1.1 |
| TC | C6_contig_195 | C6_contig_195_171 | 159519 | 161702 | + | 9.B.74.1.1 |
| CAZyme | C6_contig_195 | C6_contig_195_172 | 161818 | 163677 | - | GH2 |
Gene ID: C6_contig_195_166
Type: TC
Location: 152780 - 153613 (-)
Type: TC
Location: 152780 - 153613 (-)
Gene ID: C6_contig_195_167
Type: TC
Location: 153615 - 154490 (-)
Type: TC
Location: 153615 - 154490 (-)
Gene ID: C6_contig_195_168
Type: STP
Location: 154586 - 155875 (-)
Type: STP
Location: 154586 - 155875 (-)
Gene ID: C6_contig_195_169
Type: pfam
Location: 156181 - 156768 (-)
Type: pfam
Location: 156181 - 156768 (-)
Gene ID: C6_contig_195_170
Type: TC
Location: 156982 - 159516 (+)
Type: TC
Location: 156982 - 159516 (+)
Gene ID: C6_contig_195_171
Type: TC
Location: 159519 - 161702 (+)
Type: TC
Location: 159519 - 161702 (+)
Gene ID: C6_contig_195_172
Type: CAZyme
Location: 161818 - 163677 (-)
Type: CAZyme
Location: 161818 - 163677 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Dorea
Species
Dorea formicigenerans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C6_contig_195_166 | vegan > omnivore | 1.04501 | 0.02258 |
| C6_contig_195_166 | vegetarian > omnivore | 1.60159 | 0.04130 |
| C6_contig_195_167 | vegetarian > omnivore | 1.16959 | 0.04130 |
| C6_contig_195_168 | vegan > omnivore | 1.54603 | 0.02258 |
| C6_contig_195_169 | vegan > omnivore | 1.45894 | 0.02258 |
| C6_contig_195_169 | vegetarian > omnivore | 1.41949 | 0.04130 |
| C6_contig_195_170 | vegetarian > omnivore | 1.00394 | 0.04130 |
| C6_contig_195_172 | vegan > omnivore | 1.32003 | 0.02258 |
| C6_contig_195_172 | vegetarian > omnivore | 1.31268 | 0.04130 |