Cluster: C6.bin_3_CGC18
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: C6.bin_3
- CGC Family ID: CGCFAM_05276
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C6_contig_472 | C6_contig_472_138 | 140767 | 141873 | + | GT4 |
| TF | C6_contig_472 | C6_contig_472_139 | 147814 | 148683 | - | HTH_1 |
| TC | C6_contig_472 | C6_contig_472_140 | 148926 | 150191 | + | 2.A.47.4.5 |
Gene ID: C6_contig_472_138
Type: CAZyme
Location: 140767 - 141873 (+)
Type: CAZyme
Location: 140767 - 141873 (+)
Gene ID: C6_contig_472_139
Type: TF
Location: 147814 - 148683 (-)
Type: TF
Location: 147814 - 148683 (-)
Gene ID: C6_contig_472_140
Type: TC
Location: 148926 - 150191 (+)
Type: TC
Location: 148926 - 150191 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Dorea
Species
Dorea formicigenerans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C6_contig_472_139 | vegan > omnivore | 1.20215 | 0.02258 |
| C6_contig_472_140 | vegan > omnivore | 1.05188 | 0.02258 |