Cluster: C6.bin_3_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: C6.bin_3
- CGC Family ID: CGCFAM_00163
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C6_contig_200 | C6_contig_200_1952 | 2051109 | 2052455 | - | 2.A.66.1.33 |
| peptidase | C6_contig_200 | C6_contig_200_1953 | 2052592 | 2054838 | - | C40.UPW |
| NULL(UNKNOWN) | C6_contig_200 | C6_contig_200_1954 | 2055085 | 2055573 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C6_contig_200 | C6_contig_200_1955 | 2055711 | 2057669 | - | CE4 |
Gene ID: C6_contig_200_1952
Type: TC
Location: 2051109 - 2052455 (-)
Type: TC
Location: 2051109 - 2052455 (-)
Gene ID: C6_contig_200_1953
Type: peptidase
Location: 2052592 - 2054838 (-)
Type: peptidase
Location: 2052592 - 2054838 (-)
Gene ID: C6_contig_200_1954
Type:
Location: 2055085 - 2055573 (-)
Type:
Location: 2055085 - 2055573 (-)
Gene ID: C6_contig_200_1955
Type: CAZyme
Location: 2055711 - 2057669 (-)
Type: CAZyme
Location: 2055711 - 2057669 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Dorea
Species
Dorea formicigenerans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C6_contig_200_1953 | vegan > omnivore | 1.25749 | 0.02258 |
| C6_contig_200_1953 | vegetarian > omnivore | 1.23058 | 0.04130 |
| C6_contig_200_1954 | vegan > omnivore | 2.03290 | 0.02258 |
| C6_contig_200_1954 | vegetarian > omnivore | 2.01524 | 0.02628 |
| C6_contig_200_1955 | vegetarian > omnivore | 1.05742 | 0.04130 |