Cluster: C6.bin_3_CGC12
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: C6.bin_3
- CGC Family ID: CGCFAM_00161
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C6_contig_200 | C6_contig_200_1212 | 1233206 | 1233883 | + | GT26 |
| pfam | C6_contig_200 | C6_contig_200_1213 | 1234018 | 1235106 | + | HTH_30 | GGDEF_2 |
| TC | C6_contig_200 | C6_contig_200_1214 | 1235124 | 1235810 | + | 3.A.1.140.1 |
| pfam | C6_contig_200 | C6_contig_200_1215 | 1235800 | 1236708 | + | FtsX | FtsX_ECD |
| STP | C6_contig_200 | C6_contig_200_1216 | 1236742 | 1237875 | + | Peptidase_M23 |
| TC | C6_contig_200 | C6_contig_200_1217 | 1237911 | 1239146 | + | 9.B.174.1.2 |
| NULL(UNKNOWN) | C6_contig_200 | C6_contig_200_1218 | 1239264 | 1239764 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C6_contig_200 | C6_contig_200_1219 | 1239757 | 1240683 | - | HTH_30 | GGDEF_2 |
| TC | C6_contig_200 | C6_contig_200_1220 | 1240787 | 1241896 | - | 3.A.1.1.26 |
Gene ID: C6_contig_200_1212
Type: CAZyme
Location: 1233206 - 1233883 (+)
Type: CAZyme
Location: 1233206 - 1233883 (+)
Gene ID: C6_contig_200_1213
Type: pfam
Location: 1234018 - 1235106 (+)
Type: pfam
Location: 1234018 - 1235106 (+)
Gene ID: C6_contig_200_1214
Type: TC
Location: 1235124 - 1235810 (+)
Type: TC
Location: 1235124 - 1235810 (+)
Gene ID: C6_contig_200_1215
Type: pfam
Location: 1235800 - 1236708 (+)
Type: pfam
Location: 1235800 - 1236708 (+)
Gene ID: C6_contig_200_1216
Type: STP
Location: 1236742 - 1237875 (+)
Type: STP
Location: 1236742 - 1237875 (+)
Gene ID: C6_contig_200_1217
Type: TC
Location: 1237911 - 1239146 (+)
Type: TC
Location: 1237911 - 1239146 (+)
Gene ID: C6_contig_200_1218
Type:
Location: 1239264 - 1239764 (-)
Type:
Location: 1239264 - 1239764 (-)
Gene ID: C6_contig_200_1219
Type: pfam
Location: 1239757 - 1240683 (-)
Type: pfam
Location: 1239757 - 1240683 (-)
Gene ID: C6_contig_200_1220
Type: TC
Location: 1240787 - 1241896 (-)
Type: TC
Location: 1240787 - 1241896 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Dorea
Species
Dorea formicigenerans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C6_contig_200_1216 | vegan > omnivore | 1.37096 | 0.02258 |
| C6_contig_200_1217 | vegan > omnivore | 1.07896 | 0.02258 |
| C6_contig_200_1218 | vegetarian > omnivore | 1.52146 | 0.04130 |
| C6_contig_200_1219 | vegan > omnivore | 1.18599 | 0.02258 |
| C6_contig_200_1219 | vegetarian > omnivore | 1.08805 | 0.04130 |